Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF215 (zinc finger protein 215)

Identity

Alias_symbol (synonym)ZKSCAN11
ZSCAN43
Other aliasBAZ-2
BAZ2
HGNC (Hugo) ZNF215
LocusID (NCBI) 7762
Atlas_Id 308
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6926361 and ends at 6958047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Beckwith-Wiedemann syndrome

External links

Nomenclature
HGNC (Hugo)ZNF215   13007
Cards
Entrez_Gene (NCBI)ZNF215  7762  zinc finger protein 215
AliasesBAZ-2; BAZ2; ZKSCAN11; ZSCAN43
GeneCards (Weizmann)ZNF215
Ensembl hg19 (Hinxton)ENSG00000149054 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149054 [Gene_View]  ENSG00000149054 [Sequence]  chr11:6926361-6958047 [Contig_View]  ZNF215 [Vega]
ICGC DataPortalENSG00000149054
TCGA cBioPortalZNF215
AceView (NCBI)ZNF215
Genatlas (Paris)ZNF215
WikiGenes7762
SOURCE (Princeton)ZNF215
Genetics Home Reference (NIH)ZNF215
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF215  -     chr11:6926361-6958047 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF215  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathZNF215 - 11p15.4 [CytoView hg19]  ZNF215 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000149054
Mapping of homologs : NCBIZNF215 [Mapview hg19]  ZNF215 [Mapview hg38]
OMIM605016   
Gene and transcription
Genbank (Entrez)AF056618 AK298365 AK302639 BC014538 BX117423
RefSeq transcript (Entrez)NM_001354853 NM_001354854 NM_001354855 NM_001354856 NM_001354857 NM_001354858 NM_001354859 NM_001354860 NM_013250
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF215
Cluster EST : UnigeneHs.523457 [ NCBI ]
CGAP (NCI)Hs.523457
Alternative Splicing GalleryENSG00000149054
Gene ExpressionZNF215 [ NCBI-GEO ]   ZNF215 [ EBI - ARRAY_EXPRESS ]   ZNF215 [ SEEK ]   ZNF215 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF215 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7762
GTEX Portal (Tissue expression)ZNF215
Human Protein AtlasENSG00000149054-ZNF215 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UL58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UL58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UL58
Splice isoforms : SwissVarQ9UL58
PhosPhoSitePlusQ9UL58
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    SCAN_dom    SCAN_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam01352    pfam02023   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF215
DMDM Disease mutations7762
Blocks (Seattle)ZNF215
SuperfamilyQ9UL58
Human Protein Atlas [tissue]ENSG00000149054-ZNF215 [tissue]
Peptide AtlasQ9UL58
HPRD05425
IPIIPI00007821   IPI01018125   IPI00060301   
Protein Interaction databases
DIP (DOE-UCLA)Q9UL58
IntAct (EBI)Q9UL58
FunCoupENSG00000149054
BioGRIDZNF215
STRING (EMBL)ZNF215
ZODIACZNF215
Ontologies - Pathways
QuickGOQ9UL58
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF215
Atlas of Cancer Signalling NetworkZNF215
Wikipedia pathwaysZNF215
Orthology - Evolution
OrthoDB7762
GeneTree (enSembl)ENSG00000149054
Phylogenetic Trees/Animal Genes : TreeFamZNF215
HOGENOMQ9UL58
Homologs : HomoloGeneZNF215
Homology/Alignments : Family Browser (UCSC)ZNF215
Gene fusions - Rearrangements
Fusion : QuiverZNF215
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF215 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF215
dbVarZNF215
ClinVarZNF215
1000_GenomesZNF215 
Exome Variant ServerZNF215
ExAC (Exome Aggregation Consortium)ENSG00000149054
GNOMAD BrowserENSG00000149054
Varsome BrowserZNF215
Genetic variants : HAPMAP7762
Genomic Variants (DGV)ZNF215 [DGVbeta]
DECIPHERZNF215 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF215 
Mutations
ICGC Data PortalZNF215 
TCGA Data PortalZNF215 
Broad Tumor PortalZNF215
OASIS PortalZNF215 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF215  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF215
Mutations and Diseases : HGMDZNF215
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF215
DgiDB (Drug Gene Interaction Database)ZNF215
DoCM (Curated mutations)ZNF215 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF215 (select a term)
intoGenZNF215
Cancer3DZNF215(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605016   
Orphanet
DisGeNETZNF215
MedgenZNF215
Genetic Testing Registry ZNF215
NextProtQ9UL58 [Medical]
TSGene7762
GENETestsZNF215
Target ValidationZNF215
Huge Navigator ZNF215 [HugePedia]
snp3D : Map Gene to Disease7762
BioCentury BCIQZNF215
ClinGenZNF215
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7762
Chemical/Pharm GKB GenePA37586
Clinical trialZNF215
Miscellaneous
canSAR (ICR)ZNF215 (select the gene name)
DataMed IndexZNF215
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF215
EVEXZNF215
GoPubMedZNF215
iHOPZNF215
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:16:12 CET 2019
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