Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF343 (zinc finger protein 343)

Identity

Alias_symbol (synonym)MGC10715
Other aliasdJ734P14.5
HGNC (Hugo) ZNF343
LocusID (NCBI) 79175
Atlas_Id 76112
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 2481821 and ends at 2524522 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF343 (20p13) / NCOA6 (20q11.22)ZNF343 (20p13) / PRPSAP2 (17p11.2)ZNF343 (20p13) / SNRPB (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF343   16017
Cards
Entrez_Gene (NCBI)ZNF343  79175  zinc finger protein 343
AliasesdJ734P14.5
GeneCards (Weizmann)ZNF343
Ensembl hg19 (Hinxton)ENSG00000088876 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000088876 [Gene_View]  ENSG00000088876 [Sequence]  chr20:2481821-2524522 [Contig_View]  ZNF343 [Vega]
ICGC DataPortalENSG00000088876
TCGA cBioPortalZNF343
AceView (NCBI)ZNF343
Genatlas (Paris)ZNF343
WikiGenes79175
SOURCE (Princeton)ZNF343
Genetics Home Reference (NIH)ZNF343
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF343  -     chr20:2481821-2524522 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF343  -     20p13   [Description]    (hg19-Feb_2009)
GoldenPathZNF343 - 20p13 [CytoView hg19]  ZNF343 - 20p13 [CytoView hg38]
ImmunoBaseENSG00000088876
Mapping of homologs : NCBIZNF343 [Mapview hg19]  ZNF343 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055734 AK096911 BC002897 BC011862 BC065009
RefSeq transcript (Entrez)NM_001282495 NM_001282496 NM_001282497 NM_001282498 NM_001282499 NM_001321800 NM_001321801 NM_001321802 NM_001321803 NM_001321805 NM_024325
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF343
Cluster EST : UnigeneHs.516846 [ NCBI ]
CGAP (NCI)Hs.516846
Alternative Splicing GalleryENSG00000088876
Gene ExpressionZNF343 [ NCBI-GEO ]   ZNF343 [ EBI - ARRAY_EXPRESS ]   ZNF343 [ SEEK ]   ZNF343 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF343 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79175
GTEX Portal (Tissue expression)ZNF343
Human Protein AtlasENSG00000088876-ZNF343 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P1L6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P1L6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P1L6
Splice isoforms : SwissVarQ6P1L6
PhosPhoSitePlusQ6P1L6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF343
DMDM Disease mutations79175
Blocks (Seattle)ZNF343
SuperfamilyQ6P1L6
Human Protein Atlas [tissue]ENSG00000088876-ZNF343 [tissue]
Peptide AtlasQ6P1L6
HPRD18327
IPIIPI00171188   IPI00654817   IPI00013618   IPI01012869   IPI00646593   
Protein Interaction databases
DIP (DOE-UCLA)Q6P1L6
IntAct (EBI)Q6P1L6
FunCoupENSG00000088876
BioGRIDZNF343
STRING (EMBL)ZNF343
ZODIACZNF343
Ontologies - Pathways
QuickGOQ6P1L6
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF343
Atlas of Cancer Signalling NetworkZNF343
Wikipedia pathwaysZNF343
Orthology - Evolution
OrthoDB79175
GeneTree (enSembl)ENSG00000088876
Phylogenetic Trees/Animal Genes : TreeFamZNF343
HOGENOMQ6P1L6
Homologs : HomoloGeneZNF343
Homology/Alignments : Family Browser (UCSC)ZNF343
Gene fusions - Rearrangements
Fusion : QuiverZNF343
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF343 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF343
dbVarZNF343
ClinVarZNF343
1000_GenomesZNF343 
Exome Variant ServerZNF343
ExAC (Exome Aggregation Consortium)ENSG00000088876
GNOMAD BrowserENSG00000088876
Varsome BrowserZNF343
Genetic variants : HAPMAP79175
Genomic Variants (DGV)ZNF343 [DGVbeta]
DECIPHERZNF343 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF343 
Mutations
ICGC Data PortalZNF343 
TCGA Data PortalZNF343 
Broad Tumor PortalZNF343
OASIS PortalZNF343 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF343  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF343
Mutations and Diseases : HGMDZNF343
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF343
DgiDB (Drug Gene Interaction Database)ZNF343
DoCM (Curated mutations)ZNF343 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF343 (select a term)
intoGenZNF343
Cancer3DZNF343(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF343
MedgenZNF343
Genetic Testing Registry ZNF343
NextProtQ6P1L6 [Medical]
TSGene79175
GENETestsZNF343
Target ValidationZNF343
Huge Navigator ZNF343 [HugePedia]
snp3D : Map Gene to Disease79175
BioCentury BCIQZNF343
ClinGenZNF343
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79175
Chemical/Pharm GKB GenePA38081
Clinical trialZNF343
Miscellaneous
canSAR (ICR)ZNF343 (select the gene name)
DataMed IndexZNF343
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF343
EVEXZNF343
GoPubMedZNF343
iHOPZNF343
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:14:00 CEST 2019
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