Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF410 (zinc finger protein 410)

Identity

Alias_symbol (synonym)APA1
APA-1
Other alias
HGNC (Hugo) ZNF410
LocusID (NCBI) 57862
Atlas_Id 54805
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 73886615 and ends at 73932288 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF410 (14q24.3) / FSTL1 (3q13.33)ZNF410 (14q24.3) / PTGR2 (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  ZNF410/PTGR2 (14q24)


External links

Nomenclature
HGNC (Hugo)ZNF410   20144
Cards
Entrez_Gene (NCBI)ZNF410  57862  zinc finger protein 410
AliasesAPA-1; APA1
GeneCards (Weizmann)ZNF410
Ensembl hg19 (Hinxton)ENSG00000119725 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119725 [Gene_View]  ENSG00000119725 [Sequence]  chr14:73886615-73932288 [Contig_View]  ZNF410 [Vega]
ICGC DataPortalENSG00000119725
TCGA cBioPortalZNF410
AceView (NCBI)ZNF410
Genatlas (Paris)ZNF410
WikiGenes57862
SOURCE (Princeton)ZNF410
Genetics Home Reference (NIH)ZNF410
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF410  -     chr14:73886615-73932288 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF410  -     14q24.3   [Description]    (hg19-Feb_2009)
GoldenPathZNF410 - 14q24.3 [CytoView hg19]  ZNF410 - 14q24.3 [CytoView hg38]
ImmunoBaseENSG00000119725
Mapping of homologs : NCBIZNF410 [Mapview hg19]  ZNF410 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA652386 AK223261 AK293350 AK298307 AK298520
RefSeq transcript (Entrez)NM_001242924 NM_001242926 NM_001242927 NM_001242928 NM_021188
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF410
Cluster EST : UnigeneHs.270869 [ NCBI ]
CGAP (NCI)Hs.270869
Alternative Splicing GalleryENSG00000119725
Gene ExpressionZNF410 [ NCBI-GEO ]   ZNF410 [ EBI - ARRAY_EXPRESS ]   ZNF410 [ SEEK ]   ZNF410 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF410 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57862
GTEX Portal (Tissue expression)ZNF410
Human Protein AtlasENSG00000119725-ZNF410 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VK4
Splice isoforms : SwissVarQ86VK4
PhosPhoSitePlusQ86VK4
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF410
DMDM Disease mutations57862
Blocks (Seattle)ZNF410
SuperfamilyQ86VK4
Human Protein Atlas [tissue]ENSG00000119725-ZNF410 [tissue]
Peptide AtlasQ86VK4
HPRD18339
IPIIPI00939251   IPI00106475   IPI00328915   IPI00009618   IPI00908802   IPI01012906   IPI00911005   IPI00909848   IPI01025936   IPI01025641   IPI01026315   IPI01025424   IPI01025073   IPI01025143   IPI01024917   IPI01026439   IPI01026421   IPI01026213   IPI01026092   IPI01026001   
Protein Interaction databases
DIP (DOE-UCLA)Q86VK4
IntAct (EBI)Q86VK4
FunCoupENSG00000119725
BioGRIDZNF410
STRING (EMBL)ZNF410
ZODIACZNF410
Ontologies - Pathways
QuickGOQ86VK4
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF410
Atlas of Cancer Signalling NetworkZNF410
Wikipedia pathwaysZNF410
Orthology - Evolution
OrthoDB57862
GeneTree (enSembl)ENSG00000119725
Phylogenetic Trees/Animal Genes : TreeFamZNF410
HOGENOMQ86VK4
Homologs : HomoloGeneZNF410
Homology/Alignments : Family Browser (UCSC)ZNF410
Gene fusions - Rearrangements
Fusion : MitelmanZNF410/PTGR2 [14q24.3/14q24.3]  
Fusion : QuiverZNF410
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF410 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF410
dbVarZNF410
ClinVarZNF410
1000_GenomesZNF410 
Exome Variant ServerZNF410
ExAC (Exome Aggregation Consortium)ENSG00000119725
GNOMAD BrowserENSG00000119725
Varsome BrowserZNF410
Genetic variants : HAPMAP57862
Genomic Variants (DGV)ZNF410 [DGVbeta]
DECIPHERZNF410 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF410 
Mutations
ICGC Data PortalZNF410 
TCGA Data PortalZNF410 
Broad Tumor PortalZNF410
OASIS PortalZNF410 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF410  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF410
Mutations and Diseases : HGMDZNF410
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF410
DgiDB (Drug Gene Interaction Database)ZNF410
DoCM (Curated mutations)ZNF410 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF410 (select a term)
intoGenZNF410
Cancer3DZNF410(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF410
MedgenZNF410
Genetic Testing Registry ZNF410
NextProtQ86VK4 [Medical]
TSGene57862
GENETestsZNF410
Target ValidationZNF410
Huge Navigator ZNF410 [HugePedia]
snp3D : Map Gene to Disease57862
BioCentury BCIQZNF410
ClinGenZNF410
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57862
Chemical/Pharm GKB GenePA134958929
Clinical trialZNF410
Miscellaneous
canSAR (ICR)ZNF410 (select the gene name)
DataMed IndexZNF410
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF410
EVEXZNF410
GoPubMedZNF410
iHOPZNF410
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:16:20 CET 2019

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