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ZNF438 (zinc finger protein 438)

Identity

Alias_symbol (synonym)bA330O11.1
Other alias
HGNC (Hugo) ZNF438
LocusID (NCBI) 220929
Atlas_Id 76156
Location 10p11.23  [Link to chromosome band 10p11]
Location_base_pair Starts at 30844636 and ends at 31031937 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BICD1 (12p11.21) / ZNF438 (10p11.23)ZEB1 (10p11.22) / ZNF438 (10p11.23)ZNF438 (10p11.23) / ZNF438 (10p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF438   21029
Cards
Entrez_Gene (NCBI)ZNF438  220929  zinc finger protein 438
AliasesbA330O11.1
GeneCards (Weizmann)ZNF438
Ensembl hg19 (Hinxton)ENSG00000183621 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183621 [Gene_View]  ENSG00000183621 [Sequence]  chr10:30844636-31031937 [Contig_View]  ZNF438 [Vega]
ICGC DataPortalENSG00000183621
TCGA cBioPortalZNF438
AceView (NCBI)ZNF438
Genatlas (Paris)ZNF438
WikiGenes220929
SOURCE (Princeton)ZNF438
Genetics Home Reference (NIH)ZNF438
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF438  -     chr10:30844636-31031937 -  10p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF438  -     10p11.23   [Description]    (hg19-Feb_2009)
GoldenPathZNF438 - 10p11.23 [CytoView hg19]  ZNF438 - 10p11.23 [CytoView hg38]
ImmunoBaseENSG00000183621
Mapping of homologs : NCBIZNF438 [Mapview hg19]  ZNF438 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF428258 AF440405 AI703004 AK057323 AK131357
RefSeq transcript (Entrez)NM_001143766 NM_001143767 NM_001143768 NM_001143769 NM_001143770 NM_001143771 NM_182755
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF438
Cluster EST : UnigeneHs.660642 [ NCBI ]
CGAP (NCI)Hs.660642
Alternative Splicing GalleryENSG00000183621
Gene ExpressionZNF438 [ NCBI-GEO ]   ZNF438 [ EBI - ARRAY_EXPRESS ]   ZNF438 [ SEEK ]   ZNF438 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF438 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220929
GTEX Portal (Tissue expression)ZNF438
Human Protein AtlasENSG00000183621-ZNF438 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4V0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4V0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4V0
Splice isoforms : SwissVarQ7Z4V0
PhosPhoSitePlusQ7Z4V0
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF438
DMDM Disease mutations220929
Blocks (Seattle)ZNF438
SuperfamilyQ7Z4V0
Human Protein Atlas [tissue]ENSG00000183621-ZNF438 [tissue]
Peptide AtlasQ7Z4V0
HPRD11247
IPIIPI00150496   IPI00761112   IPI00760902   IPI00978653   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4V0
IntAct (EBI)Q7Z4V0
FunCoupENSG00000183621
BioGRIDZNF438
STRING (EMBL)ZNF438
ZODIACZNF438
Ontologies - Pathways
QuickGOQ7Z4V0
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity  nucleus  nucleus  nucleoplasm  nucleoplasm  cytosol  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF438
Atlas of Cancer Signalling NetworkZNF438
Wikipedia pathwaysZNF438
Orthology - Evolution
OrthoDB220929
GeneTree (enSembl)ENSG00000183621
Phylogenetic Trees/Animal Genes : TreeFamZNF438
HOGENOMQ7Z4V0
Homologs : HomoloGeneZNF438
Homology/Alignments : Family Browser (UCSC)ZNF438
Gene fusions - Rearrangements
Fusion : QuiverZNF438
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF438 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF438
dbVarZNF438
ClinVarZNF438
1000_GenomesZNF438 
Exome Variant ServerZNF438
ExAC (Exome Aggregation Consortium)ENSG00000183621
GNOMAD BrowserENSG00000183621
Varsome BrowserZNF438
Genetic variants : HAPMAP220929
Genomic Variants (DGV)ZNF438 [DGVbeta]
DECIPHERZNF438 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF438 
Mutations
ICGC Data PortalZNF438 
TCGA Data PortalZNF438 
Broad Tumor PortalZNF438
OASIS PortalZNF438 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF438  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF438
Mutations and Diseases : HGMDZNF438
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF438
DgiDB (Drug Gene Interaction Database)ZNF438
DoCM (Curated mutations)ZNF438 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF438 (select a term)
intoGenZNF438
Cancer3DZNF438(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF438
MedgenZNF438
Genetic Testing Registry ZNF438
NextProtQ7Z4V0 [Medical]
TSGene220929
GENETestsZNF438
Target ValidationZNF438
Huge Navigator ZNF438 [HugePedia]
snp3D : Map Gene to Disease220929
BioCentury BCIQZNF438
ClinGenZNF438
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220929
Chemical/Pharm GKB GenePA143485677
Clinical trialZNF438
Miscellaneous
canSAR (ICR)ZNF438 (select the gene name)
DataMed IndexZNF438
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF438
EVEXZNF438
GoPubMedZNF438
iHOPZNF438
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:14:08 CEST 2019

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