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ZNF439 (zinc finger protein 439)

Identity

Alias (NCBI)-
HGNC (Hugo) ZNF439
HGNC Alias symbDKFZp571K0837
LocusID (NCBI) 90594
Atlas_Id 76157
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11866029 and ends at 11869491 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MLLT1 (19p13.3) / ZNF439 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  MLLT1/ZNF439 (19p13)


External links

Nomenclature
HGNC (Hugo)ZNF439   20873
Cards
Entrez_Gene (NCBI)ZNF439  90594  zinc finger protein 439
Aliases
GeneCards (Weizmann)ZNF439
Ensembl hg19 (Hinxton)ENSG00000171291 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171291 [Gene_View]  ENSG00000171291 [Sequence]  chr19:11866029-11869491 [Contig_View]  ZNF439 [Vega]
ICGC DataPortalENSG00000171291
TCGA cBioPortalZNF439
AceView (NCBI)ZNF439
Genatlas (Paris)ZNF439
WikiGenes90594
SOURCE (Princeton)ZNF439
Genetics Home Reference (NIH)ZNF439
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF439  -     chr19:11866029-11869491 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF439  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathZNF439 - 19p13.2 [CytoView hg19]  ZNF439 - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000171291
genome Data Viewer NCBIZNF439 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK027542 AL833935 BC032857
RefSeq transcript (Entrez)NM_001348718 NM_001348719 NM_001348720 NM_001348721 NM_001348722 NM_001348723 NM_001348724 NM_001348725 NM_152262
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF439
Alternative Splicing GalleryENSG00000171291
Gene ExpressionZNF439 [ NCBI-GEO ]   ZNF439 [ EBI - ARRAY_EXPRESS ]   ZNF439 [ SEEK ]   ZNF439 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF439 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF439 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90594
GTEX Portal (Tissue expression)ZNF439
Human Protein AtlasENSG00000171291-ZNF439 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDP4
Splice isoforms : SwissVarQ8NDP4
PhosPhoSitePlusQ8NDP4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF439
DMDM Disease mutations90594
Blocks (Seattle)ZNF439
SuperfamilyQ8NDP4
Human Protein Atlas [tissue]ENSG00000171291-ZNF439 [tissue]
Peptide AtlasQ8NDP4
HPRD11717
IPIIPI00168560   IPI00641003   IPI00924725   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDP4
IntAct (EBI)Q8NDP4
FunCoupENSG00000171291
BioGRIDZNF439
STRING (EMBL)ZNF439
ZODIACZNF439
Ontologies - Pathways
QuickGOQ8NDP4
Ontology : AmiGODNA-binding transcription factor activity  protein binding  nucleus  regulation of transcription, DNA-templated  sequence-specific DNA binding  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity  protein binding  nucleus  regulation of transcription, DNA-templated  sequence-specific DNA binding  metal ion binding  
NDEx NetworkZNF439
Atlas of Cancer Signalling NetworkZNF439
Wikipedia pathwaysZNF439
Orthology - Evolution
OrthoDB90594
GeneTree (enSembl)ENSG00000171291
Phylogenetic Trees/Animal Genes : TreeFamZNF439
HOGENOMQ8NDP4
Homologs : HomoloGeneZNF439
Homology/Alignments : Family Browser (UCSC)ZNF439
Gene fusions - Rearrangements
Fusion : QuiverZNF439
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF439 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF439
dbVarZNF439
ClinVarZNF439
1000_GenomesZNF439 
Exome Variant ServerZNF439
GNOMAD BrowserENSG00000171291
Varsome BrowserZNF439
Genetic variants : HAPMAP90594
Genomic Variants (DGV)ZNF439 [DGVbeta]
DECIPHERZNF439 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF439 
Mutations
ICGC Data PortalZNF439 
TCGA Data PortalZNF439 
Broad Tumor PortalZNF439
OASIS PortalZNF439 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF439  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF439
Mutations and Diseases : HGMDZNF439
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF439
DgiDB (Drug Gene Interaction Database)ZNF439
DoCM (Curated mutations)ZNF439 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF439 (select a term)
intoGenZNF439
Cancer3DZNF439(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF439
MedgenZNF439
Genetic Testing Registry ZNF439
NextProtQ8NDP4 [Medical]
TSGene90594
GENETestsZNF439
Target ValidationZNF439
Huge Navigator ZNF439 [HugePedia]
snp3D : Map Gene to Disease90594
BioCentury BCIQZNF439
ClinGenZNF439
Clinical trials, drugs, therapy
Protein Interactions : CTD90594
Pharm GKB GenePA134886330
Clinical trialZNF439
Miscellaneous
canSAR (ICR)ZNF439 (select the gene name)
HarmonizomeZNF439
DataMed IndexZNF439
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF439
EVEXZNF439
GoPubMedZNF439
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:40:55 CEST 2020

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