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ZNF470 (zinc finger protein 470)

Identity

Alias (NCBI)CZF-1
HGNC (Hugo) ZNF470
HGNC Alias symbCZF-1
FLJ26175
LocusID (NCBI) 388566
Atlas_Id 76174
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56567521 and ends at 56582894 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF470 (19q13.43) / ZNF835 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  ZNF470/ZNF835 (19q13)


External links

Nomenclature
HGNC (Hugo)ZNF470   22220
Cards
Entrez_Gene (NCBI)ZNF470    zinc finger protein 470
AliasesCZF-1
GeneCards (Weizmann)ZNF470
Ensembl hg19 (Hinxton)ENSG00000197016 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197016 [Gene_View]  ENSG00000197016 [Sequence]  chr19:56567521-56582894 [Contig_View]  ZNF470 [Vega]
ICGC DataPortalENSG00000197016
TCGA cBioPortalZNF470
AceView (NCBI)ZNF470
Genatlas (Paris)ZNF470
SOURCE (Princeton)ZNF470
Genetics Home Reference (NIH)ZNF470
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF470  -     chr19:56567521-56582894 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF470  -     19q13.43   [Description]    (hg19-Feb_2009)
GoldenPathZNF470 - 19q13.43 [CytoView hg19]  ZNF470 - 19q13.43 [CytoView hg38]
ImmunoBaseENSG00000197016
genome Data Viewer NCBIZNF470 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA977233 AK129686 AK130356 AY484591 BC136762
RefSeq transcript (Entrez)NM_001001668
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF470
Alternative Splicing GalleryENSG00000197016
Gene ExpressionZNF470 [ NCBI-GEO ]   ZNF470 [ EBI - ARRAY_EXPRESS ]   ZNF470 [ SEEK ]   ZNF470 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF470 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF470 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388566
GTEX Portal (Tissue expression)ZNF470
Human Protein AtlasENSG00000197016-ZNF470 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ECI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ECI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ECI4
Splice isoforms : SwissVarQ6ECI4
PhosPhoSitePlusQ6ECI4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF470
Blocks (Seattle)ZNF470
SuperfamilyQ6ECI4
Human Protein Atlas [tissue]ENSG00000197016-ZNF470 [tissue]
Peptide AtlasQ6ECI4
HPRD13398
IPIIPI00791472   IPI00294218   
Protein Interaction databases
DIP (DOE-UCLA)Q6ECI4
IntAct (EBI)Q6ECI4
BioGRIDZNF470
STRING (EMBL)ZNF470
ZODIACZNF470
Ontologies - Pathways
QuickGOQ6ECI4
Ontology : AmiGODNA binding  nucleoplasm  regulation of transcription, DNA-templated  nuclear body  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleoplasm  regulation of transcription, DNA-templated  nuclear body  metal ion binding  
NDEx NetworkZNF470
Atlas of Cancer Signalling NetworkZNF470
Wikipedia pathwaysZNF470
Orthology - Evolution
OrthoDB388566
GeneTree (enSembl)ENSG00000197016
Phylogenetic Trees/Animal Genes : TreeFamZNF470
HOGENOMQ6ECI4
Homologs : HomoloGeneZNF470
Homology/Alignments : Family Browser (UCSC)ZNF470
Gene fusions - Rearrangements
Fusion : QuiverZNF470
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF470 [hg38]
dbVarZNF470
ClinVarZNF470
MonarchZNF470
1000_GenomesZNF470 
Exome Variant ServerZNF470
GNOMAD BrowserENSG00000197016
Varsome BrowserZNF470
Genomic Variants (DGV)ZNF470 [DGVbeta]
DECIPHERZNF470 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF470 
Mutations
ICGC Data PortalZNF470 
TCGA Data PortalZNF470 
Broad Tumor PortalZNF470
OASIS PortalZNF470 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF470  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF470
Mutations and Diseases : HGMDZNF470
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF470
DgiDB (Drug Gene Interaction Database)ZNF470
DoCM (Curated mutations)ZNF470 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF470 (select a term)
intoGenZNF470
Cancer3DZNF470(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF470
MedgenZNF470
Genetic Testing Registry ZNF470
NextProtQ6ECI4 [Medical]
GENETestsZNF470
Target ValidationZNF470
Huge Navigator ZNF470 [HugePedia]
ClinGenZNF470
Clinical trials, drugs, therapy
MyCancerGenomeZNF470
Protein Interactions : CTD
Pharm GKB GenePA145007252
Clinical trialZNF470
Miscellaneous
canSAR (ICR)ZNF470 (select the gene name)
HarmonizomeZNF470
DataMed IndexZNF470
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF470
EVEXZNF470
GoPubMedZNF470
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:36:09 CET 2020

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