Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF471 (zinc finger protein 471)

Identity

Alias_symbol (synonym)KIAA1396
Z1971
Other aliasERP1
HGNC (Hugo) ZNF471
LocusID (NCBI) 57573
Atlas_Id 53672
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56507843 and ends at 56530214 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF471   23226
Cards
Entrez_Gene (NCBI)ZNF471  57573  zinc finger protein 471
AliasesERP1; Z1971
GeneCards (Weizmann)ZNF471
Ensembl hg19 (Hinxton)ENSG00000196263 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196263 [Gene_View]  ENSG00000196263 [Sequence]  chr19:56507843-56530214 [Contig_View]  ZNF471 [Vega]
ICGC DataPortalENSG00000196263
TCGA cBioPortalZNF471
AceView (NCBI)ZNF471
Genatlas (Paris)ZNF471
WikiGenes57573
SOURCE (Princeton)ZNF471
Genetics Home Reference (NIH)ZNF471
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF471  -     chr19:56507843-56530214 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF471  -     19q13.43   [Description]    (hg19-Feb_2009)
GoldenPathZNF471 - 19q13.43 [CytoView hg19]  ZNF471 - 19q13.43 [CytoView hg38]
ImmunoBaseENSG00000196263
Mapping of homologs : NCBIZNF471 [Mapview hg19]  ZNF471 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037817 AF352026 AI375847 AK291416 AK293908
RefSeq transcript (Entrez)NM_001321768 NM_020813
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF471
Cluster EST : UnigeneHs.710590 [ NCBI ]
CGAP (NCI)Hs.710590
Alternative Splicing GalleryENSG00000196263
Gene ExpressionZNF471 [ NCBI-GEO ]   ZNF471 [ EBI - ARRAY_EXPRESS ]   ZNF471 [ SEEK ]   ZNF471 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF471 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57573
GTEX Portal (Tissue expression)ZNF471
Human Protein AtlasENSG00000196263-ZNF471 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BX82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BX82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BX82
Splice isoforms : SwissVarQ9BX82
PhosPhoSitePlusQ9BX82
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF471
DMDM Disease mutations57573
Blocks (Seattle)ZNF471
SuperfamilyQ9BX82
Human Protein Atlas [tissue]ENSG00000196263-ZNF471 [tissue]
Peptide AtlasQ9BX82
HPRD15797
IPIIPI00333859   
Protein Interaction databases
DIP (DOE-UCLA)Q9BX82
IntAct (EBI)Q9BX82
FunCoupENSG00000196263
BioGRIDZNF471
STRING (EMBL)ZNF471
ZODIACZNF471
Ontologies - Pathways
QuickGOQ9BX82
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF471
Atlas of Cancer Signalling NetworkZNF471
Wikipedia pathwaysZNF471
Orthology - Evolution
OrthoDB57573
GeneTree (enSembl)ENSG00000196263
Phylogenetic Trees/Animal Genes : TreeFamZNF471
HOGENOMQ9BX82
Homologs : HomoloGeneZNF471
Homology/Alignments : Family Browser (UCSC)ZNF471
Gene fusions - Rearrangements
Fusion : QuiverZNF471
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF471 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF471
dbVarZNF471
ClinVarZNF471
1000_GenomesZNF471 
Exome Variant ServerZNF471
ExAC (Exome Aggregation Consortium)ENSG00000196263
GNOMAD BrowserENSG00000196263
Varsome BrowserZNF471
Genetic variants : HAPMAP57573
Genomic Variants (DGV)ZNF471 [DGVbeta]
DECIPHERZNF471 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF471 
Mutations
ICGC Data PortalZNF471 
TCGA Data PortalZNF471 
Broad Tumor PortalZNF471
OASIS PortalZNF471 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF471  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF471
Mutations and Diseases : HGMDZNF471
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF471
DgiDB (Drug Gene Interaction Database)ZNF471
DoCM (Curated mutations)ZNF471 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF471 (select a term)
intoGenZNF471
Cancer3DZNF471(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF471
MedgenZNF471
Genetic Testing Registry ZNF471
NextProtQ9BX82 [Medical]
TSGene57573
GENETestsZNF471
Target ValidationZNF471
Huge Navigator ZNF471 [HugePedia]
snp3D : Map Gene to Disease57573
BioCentury BCIQZNF471
ClinGenZNF471
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57573
Chemical/Pharm GKB GenePA134940750
Clinical trialZNF471
Miscellaneous
canSAR (ICR)ZNF471 (select the gene name)
DataMed IndexZNF471
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF471
EVEXZNF471
GoPubMedZNF471
iHOPZNF471
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:16:22 CET 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.