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ZNF548 (zinc finger protein 548)

Identity

Alias_symbol (synonym)FLJ32932
Other alias-
HGNC (Hugo) ZNF548
LocusID (NCBI) 147694
Atlas_Id 76225
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57389850 and ends at 57402551 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GSTA1 (6p12.2) / ZNF548 (19q13.43)PKP4 (2q24.1) / ZNF548 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF548   26561
Cards
Entrez_Gene (NCBI)ZNF548  147694  zinc finger protein 548
Aliases
GeneCards (Weizmann)ZNF548
Ensembl hg19 (Hinxton)ENSG00000188785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188785 [Gene_View]  ENSG00000188785 [Sequence]  chr19:57389850-57402551 [Contig_View]  ZNF548 [Vega]
ICGC DataPortalENSG00000188785
TCGA cBioPortalZNF548
AceView (NCBI)ZNF548
Genatlas (Paris)ZNF548
WikiGenes147694
SOURCE (Princeton)ZNF548
Genetics Home Reference (NIH)ZNF548
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF548  -     chr19:57389850-57402551 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF548  -     19q13.43   [Description]    (hg19-Feb_2009)
GoldenPathZNF548 - 19q13.43 [CytoView hg19]  ZNF548 - 19q13.43 [CytoView hg38]
ImmunoBaseENSG00000188785
Mapping of homologs : NCBIZNF548 [Mapview hg19]  ZNF548 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057494 AK299069 AW449330 BC030788 BP244372
RefSeq transcript (Entrez)NM_001172773 NM_152909
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF548
Cluster EST : UnigeneHs.126905 [ NCBI ]
CGAP (NCI)Hs.126905
Alternative Splicing GalleryENSG00000188785
Gene ExpressionZNF548 [ NCBI-GEO ]   ZNF548 [ EBI - ARRAY_EXPRESS ]   ZNF548 [ SEEK ]   ZNF548 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF548 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147694
GTEX Portal (Tissue expression)ZNF548
Human Protein AtlasENSG00000188785-ZNF548 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEK5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEK5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEK5
Splice isoforms : SwissVarQ8NEK5
PhosPhoSitePlusQ8NEK5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF548
DMDM Disease mutations147694
Blocks (Seattle)ZNF548
SuperfamilyQ8NEK5
Human Protein Atlas [tissue]ENSG00000188785-ZNF548 [tissue]
Peptide AtlasQ8NEK5
HPRD15832
IPIIPI00910645   IPI00396374   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEK5
IntAct (EBI)Q8NEK5
FunCoupENSG00000188785
BioGRIDZNF548
STRING (EMBL)ZNF548
ZODIACZNF548
Ontologies - Pathways
QuickGOQ8NEK5
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF548
Atlas of Cancer Signalling NetworkZNF548
Wikipedia pathwaysZNF548
Orthology - Evolution
OrthoDB147694
GeneTree (enSembl)ENSG00000188785
Phylogenetic Trees/Animal Genes : TreeFamZNF548
HOGENOMQ8NEK5
Homologs : HomoloGeneZNF548
Homology/Alignments : Family Browser (UCSC)ZNF548
Gene fusions - Rearrangements
Fusion : QuiverZNF548
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF548 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF548
dbVarZNF548
ClinVarZNF548
1000_GenomesZNF548 
Exome Variant ServerZNF548
ExAC (Exome Aggregation Consortium)ENSG00000188785
GNOMAD BrowserENSG00000188785
Varsome BrowserZNF548
Genetic variants : HAPMAP147694
Genomic Variants (DGV)ZNF548 [DGVbeta]
DECIPHERZNF548 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF548 
Mutations
ICGC Data PortalZNF548 
TCGA Data PortalZNF548 
Broad Tumor PortalZNF548
OASIS PortalZNF548 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF548
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF548
DgiDB (Drug Gene Interaction Database)ZNF548
DoCM (Curated mutations)ZNF548 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF548 (select a term)
intoGenZNF548
Cancer3DZNF548(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF548
MedgenZNF548
Genetic Testing Registry ZNF548
NextProtQ8NEK5 [Medical]
TSGene147694
GENETestsZNF548
Target ValidationZNF548
Huge Navigator ZNF548 [HugePedia]
snp3D : Map Gene to Disease147694
BioCentury BCIQZNF548
ClinGenZNF548
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147694
Chemical/Pharm GKB GenePA134889718
Clinical trialZNF548
Miscellaneous
canSAR (ICR)ZNF548 (select the gene name)
DataMed IndexZNF548
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF548
EVEXZNF548
GoPubMedZNF548
iHOPZNF548
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:14:21 CEST 2019
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