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ZNF56 (zinc finger protein 56)

Identity

Other aliasZNF742
HGNC (Hugo) ZNF56
LocusID (NCBI) 7608
Atlas_Id 80389
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19776567 and ends at 19836179 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ZNF56   13124
Cards
Entrez_Gene (NCBI)ZNF56  7608  zinc finger protein 56
AliasesZNF742
GeneCards (Weizmann)ZNF56
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr19:19776567-19836179 [Contig_View]  ZNF56 [Vega]
TCGA cBioPortalZNF56
AceView (NCBI)ZNF56
Genatlas (Paris)ZNF56
WikiGenes7608
SOURCE (Princeton)ZNF56
Genetics Home Reference (NIH)ZNF56
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF56  -     chr19:19776567-19836179 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF56  -     19p13.11   [Description]    (hg19-Feb_2009)
GoldenPathZNF56 - 19p13.11 [CytoView hg19]  ZNF56 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIZNF56 [Mapview hg19]  ZNF56 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001355194
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF56
Gene ExpressionZNF56 [ NCBI-GEO ]   ZNF56 [ EBI - ARRAY_EXPRESS ]   ZNF56 [ SEEK ]   ZNF56 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF56 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7608
GTEX Portal (Tissue expression)ZNF56
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15929   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15929  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15929
Splice isoforms : SwissVarQ15929
PhosPhoSitePlusQ15929
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF56
DMDM Disease mutations7608
Blocks (Seattle)ZNF56
SuperfamilyQ15929
Peptide AtlasQ15929
IPIIPI00647236   
Protein Interaction databases
DIP (DOE-UCLA)Q15929
IntAct (EBI)Q15929
BioGRIDZNF56
STRING (EMBL)ZNF56
ZODIACZNF56
Ontologies - Pathways
QuickGOQ15929
Ontology : AmiGODNA binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF56
Atlas of Cancer Signalling NetworkZNF56
Wikipedia pathwaysZNF56
Orthology - Evolution
OrthoDB7608
Phylogenetic Trees/Animal Genes : TreeFamZNF56
HOGENOMQ15929
Homologs : HomoloGeneZNF56
Homology/Alignments : Family Browser (UCSC)ZNF56
Gene fusions - Rearrangements
Fusion : QuiverZNF56
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF56
dbVarZNF56
ClinVarZNF56
1000_GenomesZNF56 
Exome Variant ServerZNF56
Varsome BrowserZNF56
Genetic variants : HAPMAP7608
Genomic Variants (DGV)ZNF56 [DGVbeta]
DECIPHERZNF56 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF56 
Mutations
ICGC Data PortalZNF56 
TCGA Data PortalZNF56 
Broad Tumor PortalZNF56
OASIS PortalZNF56 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF56
BioMutasearch ZNF56
DgiDB (Drug Gene Interaction Database)ZNF56
DoCM (Curated mutations)ZNF56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF56 (select a term)
intoGenZNF56
Cancer3DZNF56(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF56
MedgenZNF56
Genetic Testing Registry ZNF56
NextProtQ15929 [Medical]
TSGene7608
GENETestsZNF56
Target ValidationZNF56
Huge Navigator ZNF56 [HugePedia]
snp3D : Map Gene to Disease7608
BioCentury BCIQZNF56
ClinGenZNF56
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7608
Chemical/Pharm GKB GenePA37698
Clinical trialZNF56
Miscellaneous
canSAR (ICR)ZNF56 (select the gene name)
DataMed IndexZNF56
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF56
EVEXZNF56
GoPubMedZNF56
iHOPZNF56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:14:23 CEST 2019

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