Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF582 (zinc finger protein 582)

Identity

Alias_symbol (synonym)FLJ30927
Other alias-
HGNC (Hugo) ZNF582
LocusID (NCBI) 147948
Atlas_Id 54951
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56382751 and ends at 56393601 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF582   26421
Cards
Entrez_Gene (NCBI)ZNF582  147948  zinc finger protein 582
Aliases
GeneCards (Weizmann)ZNF582
Ensembl hg19 (Hinxton)ENSG00000018869 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000018869 [Gene_View]  ENSG00000018869 [Sequence]  chr19:56382751-56393601 [Contig_View]  ZNF582 [Vega]
ICGC DataPortalENSG00000018869
TCGA cBioPortalZNF582
AceView (NCBI)ZNF582
Genatlas (Paris)ZNF582
WikiGenes147948
SOURCE (Princeton)ZNF582
Genetics Home Reference (NIH)ZNF582
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF582  -     chr19:56382751-56393601 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF582  -     19q13.43   [Description]    (hg19-Feb_2009)
GoldenPathZNF582 - 19q13.43 [CytoView hg19]  ZNF582 - 19q13.43 [CytoView hg38]
ImmunoBaseENSG00000018869
Mapping of homologs : NCBIZNF582 [Mapview hg19]  ZNF582 [Mapview hg38]
OMIM615600   
Gene and transcription
Genbank (Entrez)AK055489 AK299036 AK316028 AW080639 BC011796
RefSeq transcript (Entrez)NM_001320371 NM_144690
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF582
Cluster EST : UnigeneHs.655905 [ NCBI ]
CGAP (NCI)Hs.655905
Alternative Splicing GalleryENSG00000018869
Gene ExpressionZNF582 [ NCBI-GEO ]   ZNF582 [ EBI - ARRAY_EXPRESS ]   ZNF582 [ SEEK ]   ZNF582 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF582 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147948
GTEX Portal (Tissue expression)ZNF582
Human Protein AtlasENSG00000018869-ZNF582 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NG8
Splice isoforms : SwissVarQ96NG8
PhosPhoSitePlusQ96NG8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF582
DMDM Disease mutations147948
Blocks (Seattle)ZNF582
SuperfamilyQ96NG8
Human Protein Atlas [tissue]ENSG00000018869-ZNF582 [tissue]
Peptide AtlasQ96NG8
HPRD15859
IPIIPI00871791   
Protein Interaction databases
DIP (DOE-UCLA)Q96NG8
IntAct (EBI)Q96NG8
FunCoupENSG00000018869
BioGRIDZNF582
STRING (EMBL)ZNF582
ZODIACZNF582
Ontologies - Pathways
QuickGOQ96NG8
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF582
Atlas of Cancer Signalling NetworkZNF582
Wikipedia pathwaysZNF582
Orthology - Evolution
OrthoDB147948
GeneTree (enSembl)ENSG00000018869
Phylogenetic Trees/Animal Genes : TreeFamZNF582
HOGENOMQ96NG8
Homologs : HomoloGeneZNF582
Homology/Alignments : Family Browser (UCSC)ZNF582
Gene fusions - Rearrangements
Fusion : QuiverZNF582
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF582 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF582
dbVarZNF582
ClinVarZNF582
1000_GenomesZNF582 
Exome Variant ServerZNF582
ExAC (Exome Aggregation Consortium)ENSG00000018869
GNOMAD BrowserENSG00000018869
Varsome BrowserZNF582
Genetic variants : HAPMAP147948
Genomic Variants (DGV)ZNF582 [DGVbeta]
DECIPHERZNF582 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF582 
Mutations
ICGC Data PortalZNF582 
TCGA Data PortalZNF582 
Broad Tumor PortalZNF582
OASIS PortalZNF582 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF582  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF582
Mutations and Diseases : HGMDZNF582
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF582
DgiDB (Drug Gene Interaction Database)ZNF582
DoCM (Curated mutations)ZNF582 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF582 (select a term)
intoGenZNF582
Cancer3DZNF582(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615600   
Orphanet
DisGeNETZNF582
MedgenZNF582
Genetic Testing Registry ZNF582
NextProtQ96NG8 [Medical]
TSGene147948
GENETestsZNF582
Target ValidationZNF582
Huge Navigator ZNF582 [HugePedia]
snp3D : Map Gene to Disease147948
BioCentury BCIQZNF582
ClinGenZNF582
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147948
Chemical/Pharm GKB GenePA134989661
Clinical trialZNF582
Miscellaneous
canSAR (ICR)ZNF582 (select the gene name)
DataMed IndexZNF582
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF582
EVEXZNF582
GoPubMedZNF582
iHOPZNF582
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:16:24 CET 2019

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