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ZNF625 (zinc finger protein 625)

Identity

Other alias-
HGNC (Hugo) ZNF625
LocusID (NCBI) 90589
Atlas_Id 76291
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12144894 and ends at 12156731 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF625   30571
Cards
Entrez_Gene (NCBI)ZNF625  90589  zinc finger protein 625
Aliases
GeneCards (Weizmann)ZNF625
Ensembl hg19 (Hinxton)ENSG00000257591 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257591 [Gene_View]  ENSG00000257591 [Sequence]  chr19:12144894-12156731 [Contig_View]  ZNF625 [Vega]
ICGC DataPortalENSG00000257591
TCGA cBioPortalZNF625
AceView (NCBI)ZNF625
Genatlas (Paris)ZNF625
WikiGenes90589
SOURCE (Princeton)ZNF625
Genetics Home Reference (NIH)ZNF625
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF625  -     chr19:12144894-12156731 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF625  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathZNF625 - 19p13.2 [CytoView hg19]  ZNF625 - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000257591
Mapping of homologs : NCBIZNF625 [Mapview hg19]  ZNF625 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC007868 BC101589 BC101591 BC143563 DB071985
RefSeq transcript (Entrez)NM_145233
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF625
Cluster EST : UnigeneHs.732736 [ NCBI ]
CGAP (NCI)Hs.732736
Alternative Splicing GalleryENSG00000257591
Gene ExpressionZNF625 [ NCBI-GEO ]   ZNF625 [ EBI - ARRAY_EXPRESS ]   ZNF625 [ SEEK ]   ZNF625 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF625 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90589
GTEX Portal (Tissue expression)ZNF625
Human Protein AtlasENSG00000257591-ZNF625 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96I27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96I27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96I27
Splice isoforms : SwissVarQ96I27
PhosPhoSitePlusQ96I27
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF625
DMDM Disease mutations90589
Blocks (Seattle)ZNF625
SuperfamilyQ96I27
Human Protein Atlas [tissue]ENSG00000257591-ZNF625 [tissue]
Peptide AtlasQ96I27
HPRD15880
IPIIPI00925693   IPI00644616   IPI00924883   
Protein Interaction databases
DIP (DOE-UCLA)Q96I27
IntAct (EBI)Q96I27
FunCoupENSG00000257591
BioGRIDZNF625
STRING (EMBL)ZNF625
ZODIACZNF625
Ontologies - Pathways
QuickGOQ96I27
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF625
Atlas of Cancer Signalling NetworkZNF625
Wikipedia pathwaysZNF625
Orthology - Evolution
OrthoDB90589
GeneTree (enSembl)ENSG00000257591
Phylogenetic Trees/Animal Genes : TreeFamZNF625
HOGENOMQ96I27
Homologs : HomoloGeneZNF625
Homology/Alignments : Family Browser (UCSC)ZNF625
Gene fusions - Rearrangements
Fusion : QuiverZNF625
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF625 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF625
dbVarZNF625
ClinVarZNF625
1000_GenomesZNF625 
Exome Variant ServerZNF625
ExAC (Exome Aggregation Consortium)ENSG00000257591
GNOMAD BrowserENSG00000257591
Varsome BrowserZNF625
Genetic variants : HAPMAP90589
Genomic Variants (DGV)ZNF625 [DGVbeta]
DECIPHERZNF625 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF625 
Mutations
ICGC Data PortalZNF625 
TCGA Data PortalZNF625 
Broad Tumor PortalZNF625
OASIS PortalZNF625 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF625  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF625
Mutations and Diseases : HGMDZNF625
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF625
DgiDB (Drug Gene Interaction Database)ZNF625
DoCM (Curated mutations)ZNF625 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF625 (select a term)
intoGenZNF625
Cancer3DZNF625(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF625
MedgenZNF625
Genetic Testing Registry ZNF625
NextProtQ96I27 [Medical]
TSGene90589
GENETestsZNF625
Target ValidationZNF625
Huge Navigator ZNF625 [HugePedia]
snp3D : Map Gene to Disease90589
BioCentury BCIQZNF625
ClinGenZNF625
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90589
Chemical/Pharm GKB GenePA134911932
Clinical trialZNF625
Miscellaneous
canSAR (ICR)ZNF625 (select the gene name)
DataMed IndexZNF625
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF625
EVEXZNF625
GoPubMedZNF625
iHOPZNF625
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:14:33 CEST 2019

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