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ZNF660-ZNF197 (ZNF660-ZNF197 readthrough)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 110354863
Atlas_Id 80090
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 44584850 and ends at 44648471 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)ZNF660-ZNF197  110354863  ZNF660-ZNF197 readthrough
Aliases
GeneCards (Weizmann)ZNF660-ZNF197
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr3:44584850-44648471 [Contig_View]  ZNF660-ZNF197 [Vega]
TCGA cBioPortalZNF660-ZNF197
AceView (NCBI)ZNF660-ZNF197
Genatlas (Paris)ZNF660-ZNF197
WikiGenes110354863
SOURCE (Princeton)ZNF660-ZNF197
Genetics Home Reference (NIH)ZNF660-ZNF197
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF660-ZNF197  -     chr3:44584850-44648471 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF660-ZNF197  -     3p21.31   [Description]    (hg19-Feb_2009)
GoldenPathZNF660-ZNF197 - 3p21.31 [CytoView hg19]  ZNF660-ZNF197 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIZNF660-ZNF197 [Mapview hg19]  ZNF660-ZNF197 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB092136
RefSeq transcript (Entrez)NM_001351732 NM_001351733 NM_001351734 NM_001351735
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF660-ZNF197
Cluster EST : UnigeneHs.157035 [ NCBI ]
CGAP (NCI)Hs.157035
Gene ExpressionZNF660-ZNF197 [ NCBI-GEO ]   ZNF660-ZNF197 [ EBI - ARRAY_EXPRESS ]   ZNF660-ZNF197 [ SEEK ]   ZNF660-ZNF197 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF660-ZNF197 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)110354863
GTEX Portal (Tissue expression)ZNF660-ZNF197
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14709   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14709  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14709
Splice isoforms : SwissVarO14709
PhosPhoSitePlusO14709
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    SCAN_dom    SCAN_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam01352    pfam02023   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF660-ZNF197
DMDM Disease mutations110354863
Blocks (Seattle)ZNF660-ZNF197
SuperfamilyO14709
Peptide AtlasO14709
Protein Interaction databases
DIP (DOE-UCLA)O14709
IntAct (EBI)O14709
BioGRIDZNF660-ZNF197
STRING (EMBL)ZNF660-ZNF197
ZODIACZNF660-ZNF197
Ontologies - Pathways
QuickGOO14709
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF660-ZNF197
Atlas of Cancer Signalling NetworkZNF660-ZNF197
Wikipedia pathwaysZNF660-ZNF197
Orthology - Evolution
OrthoDB110354863
Phylogenetic Trees/Animal Genes : TreeFam-
HOGENOMO14709
Homologs : HomoloGeneZNF660-ZNF197
Homology/Alignments : Family Browser (UCSC)ZNF660-ZNF197
Gene fusions - Rearrangements
Fusion : QuiverZNF660-ZNF197
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF660-ZNF197 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF660-ZNF197
dbVarZNF660-ZNF197
ClinVarZNF660-ZNF197
1000_GenomesZNF660-ZNF197 
Exome Variant ServerZNF660-ZNF197
Varsome BrowserZNF660-ZNF197
Genetic variants : HAPMAP110354863
Genomic Variants (DGV)ZNF660-ZNF197 [DGVbeta]
DECIPHERZNF660-ZNF197 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF660-ZNF197 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF660-ZNF197
DgiDB (Drug Gene Interaction Database)ZNF660-ZNF197
DoCM (Curated mutations)ZNF660-ZNF197 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF660-ZNF197 (select a term)
intoGenZNF660-ZNF197
Cancer3DZNF660-ZNF197(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF660-ZNF197
MedgenZNF660-ZNF197
Genetic Testing Registry ZNF660-ZNF197
NextProtO14709 [Medical]
TSGene110354863
GENETestsZNF660-ZNF197
Target ValidationZNF660-ZNF197
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease110354863
BioCentury BCIQZNF660-ZNF197
ClinGenZNF660-ZNF197
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD110354863
Clinical trialZNF660-ZNF197
Miscellaneous
canSAR (ICR)ZNF660-ZNF197 (select the gene name)
DataMed IndexZNF660-ZNF197
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF660-ZNF197
EVEXZNF660-ZNF197
GoPubMedZNF660-ZNF197
iHOPZNF660-ZNF197
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:14:37 CEST 2019

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