Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF664-RFLNA (ZNF664-RFLNA readthrough)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100533183
Atlas_Id 79796
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 123973184 and ends at 124316024 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)ZNF664-RFLNA  100533183  ZNF664-RFLNA readthrough
Aliases
GeneCards (Weizmann)ZNF664-RFLNA
Ensembl hg19 (Hinxton)ENSG00000178882 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178882 [Gene_View]  ENSG00000178882 [Sequence]  chr12:123973184-124316024 [Contig_View]  ZNF664-RFLNA [Vega]
ICGC DataPortalENSG00000178882
TCGA cBioPortalZNF664-RFLNA
AceView (NCBI)ZNF664-RFLNA
Genatlas (Paris)ZNF664-RFLNA
WikiGenes100533183
SOURCE (Princeton)ZNF664-RFLNA
Genetics Home Reference (NIH)ZNF664-RFLNA
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF664-RFLNA  -     chr12:123973184-124316024 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF664-RFLNA  -     12q24.31   [Description]    (hg19-Feb_2009)
GoldenPathZNF664-RFLNA - 12q24.31 [CytoView hg19]  ZNF664-RFLNA - 12q24.31 [CytoView hg38]
ImmunoBaseENSG00000178882
Mapping of homologs : NCBIZNF664-RFLNA [Mapview hg19]  ZNF664-RFLNA [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA169732
RefSeq transcript (Entrez)NM_001204299 NM_001347902
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF664-RFLNA
Cluster EST : UnigeneHs.524828 [ NCBI ]
CGAP (NCI)Hs.524828
Alternative Splicing GalleryENSG00000178882
Gene ExpressionZNF664-RFLNA [ NCBI-GEO ]   ZNF664-RFLNA [ EBI - ARRAY_EXPRESS ]   ZNF664-RFLNA [ SEEK ]   ZNF664-RFLNA [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF664-RFLNA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100533183
GTEX Portal (Tissue expression)ZNF664-RFLNA
Human Protein AtlasENSG00000178882-ZNF664-RFLNA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZTI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZTI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZTI6
Splice isoforms : SwissVarQ6ZTI6
PhosPhoSitePlusQ6ZTI6
Domains : Interpro (EBI)Refilin   
Domain families : Pfam (Sanger)FAM101 (PF15068)   
Domain families : Pfam (NCBI)pfam15068   
Conserved Domain (NCBI)ZNF664-RFLNA
DMDM Disease mutations100533183
Blocks (Seattle)ZNF664-RFLNA
SuperfamilyQ6ZTI6
Human Protein Atlas [tissue]ENSG00000178882-ZNF664-RFLNA [tissue]
Peptide AtlasQ6ZTI6
IPIIPI00783898   IPI00412616   IPI00166446   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZTI6
IntAct (EBI)Q6ZTI6
FunCoupENSG00000178882
BioGRIDZNF664-RFLNA
STRING (EMBL)ZNF664-RFLNA
ZODIACZNF664-RFLNA
Ontologies - Pathways
QuickGOQ6ZTI6
Ontology : AmiGOprotein binding  cytoplasm  filamin binding  actin filament bundle  skeletal system morphogenesis  negative regulation of chondrocyte development  actin filament bundle organization  negative regulation of bone mineralization involved in bone maturation  
Ontology : EGO-EBIprotein binding  cytoplasm  filamin binding  actin filament bundle  skeletal system morphogenesis  negative regulation of chondrocyte development  actin filament bundle organization  negative regulation of bone mineralization involved in bone maturation  
NDEx NetworkZNF664-RFLNA
Atlas of Cancer Signalling NetworkZNF664-RFLNA
Wikipedia pathwaysZNF664-RFLNA
Orthology - Evolution
OrthoDB100533183
GeneTree (enSembl)ENSG00000178882
Phylogenetic Trees/Animal Genes : TreeFam-
HOGENOMQ6ZTI6
Homologs : HomoloGeneZNF664-RFLNA
Homology/Alignments : Family Browser (UCSC)ZNF664-RFLNA
Gene fusions - Rearrangements
Fusion : QuiverZNF664-RFLNA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF664-RFLNA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF664-RFLNA
dbVarZNF664-RFLNA
ClinVarZNF664-RFLNA
1000_GenomesZNF664-RFLNA 
Exome Variant ServerZNF664-RFLNA
ExAC (Exome Aggregation Consortium)ENSG00000178882
GNOMAD BrowserENSG00000178882
Varsome BrowserZNF664-RFLNA
Genetic variants : HAPMAP100533183
Genomic Variants (DGV)ZNF664-RFLNA [DGVbeta]
DECIPHERZNF664-RFLNA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF664-RFLNA 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF664-RFLNA
DgiDB (Drug Gene Interaction Database)ZNF664-RFLNA
DoCM (Curated mutations)ZNF664-RFLNA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF664-RFLNA (select a term)
intoGenZNF664-RFLNA
Cancer3DZNF664-RFLNA(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF664-RFLNA
MedgenZNF664-RFLNA
Genetic Testing Registry ZNF664-RFLNA
NextProtQ6ZTI6 [Medical]
TSGene100533183
GENETestsZNF664-RFLNA
Target ValidationZNF664-RFLNA
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100533183
BioCentury BCIQZNF664-RFLNA
ClinGenZNF664-RFLNA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100533183
Clinical trialZNF664-RFLNA
Miscellaneous
canSAR (ICR)ZNF664-RFLNA (select the gene name)
DataMed IndexZNF664-RFLNA
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF664-RFLNA
EVEXZNF664-RFLNA
GoPubMedZNF664-RFLNA
iHOPZNF664-RFLNA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:14:38 CEST 2019

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