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ZNF670 (zinc finger protein 670)

Identity

Alias_symbol (synonym)MGC12466
Other alias-
HGNC (Hugo) ZNF670
LocusID (NCBI) 93474
Atlas_Id 76319
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 247034638 and ends at 247078813 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF670 (1q44) / WDR64 (1q43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF670   28167
Cards
Entrez_Gene (NCBI)ZNF670  93474  zinc finger protein 670
Aliases
GeneCards (Weizmann)ZNF670
Ensembl hg19 (Hinxton)ENSG00000277462 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277462 [Gene_View]  ENSG00000277462 [Sequence]  chr1:247034638-247078813 [Contig_View]  ZNF670 [Vega]
ICGC DataPortalENSG00000277462
TCGA cBioPortalZNF670
AceView (NCBI)ZNF670
Genatlas (Paris)ZNF670
WikiGenes93474
SOURCE (Princeton)ZNF670
Genetics Home Reference (NIH)ZNF670
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF670  -     chr1:247034638-247078813 -  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF670  -     1q44   [Description]    (hg19-Feb_2009)
GoldenPathZNF670 - 1q44 [CytoView hg19]  ZNF670 - 1q44 [CytoView hg38]
ImmunoBaseENSG00000277462
Mapping of homologs : NCBIZNF670 [Mapview hg19]  ZNF670 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027325 AK074774 BC005360 BG532425 DA509721
RefSeq transcript (Entrez)NM_001204220 NM_033213
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF670
Cluster EST : UnigeneHs.732305 [ NCBI ]
CGAP (NCI)Hs.732305
Alternative Splicing GalleryENSG00000277462
Gene ExpressionZNF670 [ NCBI-GEO ]   ZNF670 [ EBI - ARRAY_EXPRESS ]   ZNF670 [ SEEK ]   ZNF670 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF670 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93474
GTEX Portal (Tissue expression)ZNF670
Human Protein AtlasENSG00000277462-ZNF670 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BS34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BS34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BS34
Splice isoforms : SwissVarQ9BS34
PhosPhoSitePlusQ9BS34
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF670
DMDM Disease mutations93474
Blocks (Seattle)ZNF670
SuperfamilyQ9BS34
Human Protein Atlas [tissue]ENSG00000277462-ZNF670 [tissue]
Peptide AtlasQ9BS34
HPRD11305
IPIIPI00016814   IPI00984255   IPI00975701   
Protein Interaction databases
DIP (DOE-UCLA)Q9BS34
IntAct (EBI)Q9BS34
FunCoupENSG00000277462
BioGRIDZNF670
STRING (EMBL)ZNF670
ZODIACZNF670
Ontologies - Pathways
QuickGOQ9BS34
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF670
Atlas of Cancer Signalling NetworkZNF670
Wikipedia pathwaysZNF670
Orthology - Evolution
OrthoDB93474
GeneTree (enSembl)ENSG00000277462
Phylogenetic Trees/Animal Genes : TreeFamZNF670
HOGENOMQ9BS34
Homologs : HomoloGeneZNF670
Homology/Alignments : Family Browser (UCSC)ZNF670
Gene fusions - Rearrangements
Fusion : QuiverZNF670
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF670 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF670
dbVarZNF670
ClinVarZNF670
1000_GenomesZNF670 
Exome Variant ServerZNF670
ExAC (Exome Aggregation Consortium)ENSG00000277462
GNOMAD BrowserENSG00000277462
Varsome BrowserZNF670
Genetic variants : HAPMAP93474
Genomic Variants (DGV)ZNF670 [DGVbeta]
DECIPHERZNF670 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF670 
Mutations
ICGC Data PortalZNF670 
TCGA Data PortalZNF670 
Broad Tumor PortalZNF670
OASIS PortalZNF670 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF670  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF670
Mutations and Diseases : HGMDZNF670
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF670
DgiDB (Drug Gene Interaction Database)ZNF670
DoCM (Curated mutations)ZNF670 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF670 (select a term)
intoGenZNF670
Cancer3DZNF670(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF670
MedgenZNF670
Genetic Testing Registry ZNF670
NextProtQ9BS34 [Medical]
TSGene93474
GENETestsZNF670
Target ValidationZNF670
Huge Navigator ZNF670 [HugePedia]
snp3D : Map Gene to Disease93474
BioCentury BCIQZNF670
ClinGenZNF670
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93474
Chemical/Pharm GKB GenePA142670517
Clinical trialZNF670
Miscellaneous
canSAR (ICR)ZNF670 (select the gene name)
DataMed IndexZNF670
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF670
EVEXZNF670
GoPubMedZNF670
iHOPZNF670
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:14:38 CEST 2019

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