Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF71 (zinc finger protein 71)

Identity

Alias_nameszinc finger protein 71 (Cos26)
Alias_symbol (synonym)Cos26
EZFIT
Other alias
HGNC (Hugo) ZNF71
LocusID (NCBI) 58491
Atlas_Id 76353
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56595296 and ends at 56624176 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF71   13141
Cards
Entrez_Gene (NCBI)ZNF71  58491  zinc finger protein 71
AliasesEZFIT
GeneCards (Weizmann)ZNF71
Ensembl hg19 (Hinxton)ENSG00000197951 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197951 [Gene_View]  ENSG00000197951 [Sequence]  chr19:56595296-56624176 [Contig_View]  ZNF71 [Vega]
ICGC DataPortalENSG00000197951
TCGA cBioPortalZNF71
AceView (NCBI)ZNF71
Genatlas (Paris)ZNF71
WikiGenes58491
SOURCE (Princeton)ZNF71
Genetics Home Reference (NIH)ZNF71
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF71  -     chr19:56595296-56624176 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF71  -     19q13.43   [Description]    (hg19-Feb_2009)
GoldenPathZNF71 - 19q13.43 [CytoView hg19]  ZNF71 - 19q13.43 [CytoView hg38]
ImmunoBaseENSG00000197951
Mapping of homologs : NCBIZNF71 [Mapview hg19]  ZNF71 [Mapview hg38]
OMIM194545   
Gene and transcription
Genbank (Entrez)AA580897 AF269249 AK057019 AL137486 BC014280
RefSeq transcript (Entrez)NM_001370214 NM_001370215 NM_021216
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF71
Cluster EST : UnigeneHs.600391 [ NCBI ]
CGAP (NCI)Hs.600391
Alternative Splicing GalleryENSG00000197951
Gene ExpressionZNF71 [ NCBI-GEO ]   ZNF71 [ EBI - ARRAY_EXPRESS ]   ZNF71 [ SEEK ]   ZNF71 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58491
GTEX Portal (Tissue expression)ZNF71
Human Protein AtlasENSG00000197951-ZNF71 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQZ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQZ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQZ8
Splice isoforms : SwissVarQ9NQZ8
PhosPhoSitePlusQ9NQZ8
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF71
DMDM Disease mutations58491
Blocks (Seattle)ZNF71
SuperfamilyQ9NQZ8
Human Protein Atlas [tissue]ENSG00000197951-ZNF71 [tissue]
Peptide AtlasQ9NQZ8
HPRD11838
IPIIPI00021547   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQZ8
IntAct (EBI)Q9NQZ8
FunCoupENSG00000197951
BioGRIDZNF71
STRING (EMBL)ZNF71
ZODIACZNF71
Ontologies - Pathways
QuickGOQ9NQZ8
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity  nucleus  nucleoplasm  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity  nucleus  nucleoplasm  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF71
Atlas of Cancer Signalling NetworkZNF71
Wikipedia pathwaysZNF71
Orthology - Evolution
OrthoDB58491
GeneTree (enSembl)ENSG00000197951
Phylogenetic Trees/Animal Genes : TreeFamZNF71
HOGENOMQ9NQZ8
Homologs : HomoloGeneZNF71
Homology/Alignments : Family Browser (UCSC)ZNF71
Gene fusions - Rearrangements
Fusion : QuiverZNF71
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF71
dbVarZNF71
ClinVarZNF71
1000_GenomesZNF71 
Exome Variant ServerZNF71
ExAC (Exome Aggregation Consortium)ENSG00000197951
GNOMAD BrowserENSG00000197951
Varsome BrowserZNF71
Genetic variants : HAPMAP58491
Genomic Variants (DGV)ZNF71 [DGVbeta]
DECIPHERZNF71 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF71 
Mutations
ICGC Data PortalZNF71 
TCGA Data PortalZNF71 
Broad Tumor PortalZNF71
OASIS PortalZNF71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF71  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF71
Mutations and Diseases : HGMDZNF71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF71
DgiDB (Drug Gene Interaction Database)ZNF71
DoCM (Curated mutations)ZNF71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF71 (select a term)
intoGenZNF71
Cancer3DZNF71(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194545   
Orphanet
DisGeNETZNF71
MedgenZNF71
Genetic Testing Registry ZNF71
NextProtQ9NQZ8 [Medical]
TSGene58491
GENETestsZNF71
Target ValidationZNF71
Huge Navigator ZNF71 [HugePedia]
snp3D : Map Gene to Disease58491
BioCentury BCIQZNF71
ClinGenZNF71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58491
Chemical/Pharm GKB GenePA37715
Clinical trialZNF71
Miscellaneous
canSAR (ICR)ZNF71 (select the gene name)
DataMed IndexZNF71
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF71
EVEXZNF71
GoPubMedZNF71
iHOPZNF71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:14:44 CEST 2019

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