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ZNF728 (zinc finger protein 728)

Identity

Other alias-
HGNC (Hugo) ZNF728
LocusID (NCBI) 388523
Atlas_Id 76365
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 22974883 and ends at 23003208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF728   32463
Cards
Entrez_Gene (NCBI)ZNF728  388523  zinc finger protein 728
Aliases
GeneCards (Weizmann)ZNF728
Ensembl hg19 (Hinxton)ENSG00000269067 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269067 [Gene_View]  ENSG00000269067 [Sequence]  chr19:22974883-23003208 [Contig_View]  ZNF728 [Vega]
ICGC DataPortalENSG00000269067
TCGA cBioPortalZNF728
AceView (NCBI)ZNF728
Genatlas (Paris)ZNF728
WikiGenes388523
SOURCE (Princeton)ZNF728
Genetics Home Reference (NIH)ZNF728
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF728  -     chr19:22974883-23003208 -  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF728  -     19p12   [Description]    (hg19-Feb_2009)
GoldenPathZNF728 - 19p12 [CytoView hg19]  ZNF728 - 19p12 [CytoView hg38]
ImmunoBaseENSG00000269067
Mapping of homologs : NCBIZNF728 [Mapview hg19]  ZNF728 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC128130 BC128131 DA326735 DB076533
RefSeq transcript (Entrez)NM_001267716
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF728
Cluster EST : UnigeneHs.616766 [ NCBI ]
CGAP (NCI)Hs.616766
Alternative Splicing GalleryENSG00000269067
Gene ExpressionZNF728 [ NCBI-GEO ]   ZNF728 [ EBI - ARRAY_EXPRESS ]   ZNF728 [ SEEK ]   ZNF728 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF728 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388523
GTEX Portal (Tissue expression)ZNF728
Human Protein AtlasENSG00000269067-ZNF728 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DKX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DKX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DKX0
Splice isoforms : SwissVarP0DKX0
PhosPhoSitePlusP0DKX0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF728
DMDM Disease mutations388523
Blocks (Seattle)ZNF728
SuperfamilyP0DKX0
Human Protein Atlas [tissue]ENSG00000269067-ZNF728 [tissue]
Peptide AtlasP0DKX0
IPIIPI00884307   IPI00478499   
Protein Interaction databases
DIP (DOE-UCLA)P0DKX0
IntAct (EBI)P0DKX0
FunCoupENSG00000269067
BioGRIDZNF728
STRING (EMBL)ZNF728
ZODIACZNF728
Ontologies - Pathways
QuickGOP0DKX0
Ontology : AmiGOnucleic acid binding  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInucleic acid binding  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF728
Atlas of Cancer Signalling NetworkZNF728
Wikipedia pathwaysZNF728
Orthology - Evolution
OrthoDB388523
GeneTree (enSembl)ENSG00000269067
Phylogenetic Trees/Animal Genes : TreeFamZNF728
HOGENOMP0DKX0
Homologs : HomoloGeneZNF728
Homology/Alignments : Family Browser (UCSC)ZNF728
Gene fusions - Rearrangements
Fusion : QuiverZNF728
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF728 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF728
dbVarZNF728
ClinVarZNF728
1000_GenomesZNF728 
Exome Variant ServerZNF728
ExAC (Exome Aggregation Consortium)ENSG00000269067
GNOMAD BrowserENSG00000269067
Varsome BrowserZNF728
Genetic variants : HAPMAP388523
Genomic Variants (DGV)ZNF728 [DGVbeta]
DECIPHERZNF728 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF728 
Mutations
ICGC Data PortalZNF728 
TCGA Data PortalZNF728 
Broad Tumor PortalZNF728
OASIS PortalZNF728 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF728
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF728
DgiDB (Drug Gene Interaction Database)ZNF728
DoCM (Curated mutations)ZNF728 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF728 (select a term)
intoGenZNF728
Cancer3DZNF728(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF728
MedgenZNF728
Genetic Testing Registry ZNF728
NextProtP0DKX0 [Medical]
TSGene388523
GENETestsZNF728
Target ValidationZNF728
Huge Navigator ZNF728 [HugePedia]
snp3D : Map Gene to Disease388523
BioCentury BCIQZNF728
ClinGenZNF728
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388523
Chemical/Pharm GKB GenePA145149937
Clinical trialZNF728
Miscellaneous
canSAR (ICR)ZNF728 (select the gene name)
DataMed IndexZNF728
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF728
EVEXZNF728
GoPubMedZNF728
iHOPZNF728
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:14:47 CEST 2019

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