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ZNF729 (zinc finger protein 729)

Identity

Other alias-
HGNC (Hugo) ZNF729
LocusID (NCBI) 100287226
Atlas_Id 76366
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 22286450 and ends at 22317176 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF729   32464
Cards
Entrez_Gene (NCBI)ZNF729  100287226  zinc finger protein 729
Aliases
GeneCards (Weizmann)ZNF729
Ensembl hg19 (Hinxton)ENSG00000196350 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196350 [Gene_View]  ENSG00000196350 [Sequence]  chr19:22286450-22317176 [Contig_View]  ZNF729 [Vega]
ICGC DataPortalENSG00000196350
TCGA cBioPortalZNF729
AceView (NCBI)ZNF729
Genatlas (Paris)ZNF729
WikiGenes100287226
SOURCE (Princeton)ZNF729
Genetics Home Reference (NIH)ZNF729
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF729  -     chr19:22286450-22317176 +  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF729  -     19p12   [Description]    (hg19-Feb_2009)
GoldenPathZNF729 - 19p12 [CytoView hg19]  ZNF729 - 19p12 [CytoView hg38]
ImmunoBaseENSG00000196350
Mapping of homologs : NCBIZNF729 [Mapview hg19]  ZNF729 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX956721
RefSeq transcript (Entrez)NM_001242680
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF729
Cluster EST : UnigeneHs.531629 [ NCBI ]
CGAP (NCI)Hs.531629
Alternative Splicing GalleryENSG00000196350
Gene ExpressionZNF729 [ NCBI-GEO ]   ZNF729 [ EBI - ARRAY_EXPRESS ]   ZNF729 [ SEEK ]   ZNF729 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF729 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287226
GTEX Portal (Tissue expression)ZNF729
Human Protein AtlasENSG00000196350-ZNF729 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NN14   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NN14  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NN14
Splice isoforms : SwissVarA6NN14
PhosPhoSitePlusA6NN14
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF729
DMDM Disease mutations100287226
Blocks (Seattle)ZNF729
SuperfamilyA6NN14
Human Protein Atlas [tissue]ENSG00000196350-ZNF729 [tissue]
Peptide AtlasA6NN14
IPIIPI00645478   
Protein Interaction databases
DIP (DOE-UCLA)A6NN14
IntAct (EBI)A6NN14
FunCoupENSG00000196350
BioGRIDZNF729
STRING (EMBL)ZNF729
ZODIACZNF729
Ontologies - Pathways
QuickGOA6NN14
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF729
Atlas of Cancer Signalling NetworkZNF729
Wikipedia pathwaysZNF729
Orthology - Evolution
OrthoDB100287226
GeneTree (enSembl)ENSG00000196350
Phylogenetic Trees/Animal Genes : TreeFamZNF729
HOGENOMA6NN14
Homologs : HomoloGeneZNF729
Homology/Alignments : Family Browser (UCSC)ZNF729
Gene fusions - Rearrangements
Fusion : QuiverZNF729
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF729 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF729
dbVarZNF729
ClinVarZNF729
1000_GenomesZNF729 
Exome Variant ServerZNF729
ExAC (Exome Aggregation Consortium)ENSG00000196350
GNOMAD BrowserENSG00000196350
Varsome BrowserZNF729
Genetic variants : HAPMAP100287226
Genomic Variants (DGV)ZNF729 [DGVbeta]
DECIPHERZNF729 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF729 
Mutations
ICGC Data PortalZNF729 
TCGA Data PortalZNF729 
Broad Tumor PortalZNF729
OASIS PortalZNF729 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF729  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF729
Mutations and Diseases : HGMDZNF729
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF729
DgiDB (Drug Gene Interaction Database)ZNF729
DoCM (Curated mutations)ZNF729 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF729 (select a term)
intoGenZNF729
Cancer3DZNF729(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF729
MedgenZNF729
Genetic Testing Registry ZNF729
NextProtA6NN14 [Medical]
TSGene100287226
GENETestsZNF729
Target ValidationZNF729
Huge Navigator ZNF729 [HugePedia]
snp3D : Map Gene to Disease100287226
BioCentury BCIQZNF729
ClinGenZNF729
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287226
Chemical/Pharm GKB GenePA145149938
Clinical trialZNF729
Miscellaneous
canSAR (ICR)ZNF729 (select the gene name)
DataMed IndexZNF729
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF729
EVEXZNF729
GoPubMedZNF729
iHOPZNF729
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:14:47 CEST 2019

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