Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF747 (zinc finger protein 747)

Identity

Alias_symbol (synonym)MGC2474
Other alias-
HGNC (Hugo) ZNF747
LocusID (NCBI) 65988
Atlas_Id 76375
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30530367 and ends at 30534970 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF747   28350
Cards
Entrez_Gene (NCBI)ZNF747  65988  zinc finger protein 747
Aliases
GeneCards (Weizmann)ZNF747
Ensembl hg19 (Hinxton)ENSG00000169955 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169955 [Gene_View]  ENSG00000169955 [Sequence]  chr16:30530367-30534970 [Contig_View]  ZNF747 [Vega]
ICGC DataPortalENSG00000169955
TCGA cBioPortalZNF747
AceView (NCBI)ZNF747
Genatlas (Paris)ZNF747
WikiGenes65988
SOURCE (Princeton)ZNF747
Genetics Home Reference (NIH)ZNF747
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF747  -     chr16:30530367-30534970 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF747  -     16p11.2   [Description]    (hg19-Feb_2009)
GoldenPathZNF747 - 16p11.2 [CytoView hg19]  ZNF747 - 16p11.2 [CytoView hg38]
ImmunoBaseENSG00000169955
Mapping of homologs : NCBIZNF747 [Mapview hg19]  ZNF747 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA316824 AB209546 AK054567 AK292192 AK299308
RefSeq transcript (Entrez)NM_001305018 NM_001305019 NM_001305020 NM_023931
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF747
Cluster EST : UnigeneHs.625026 [ NCBI ]
CGAP (NCI)Hs.625026
Alternative Splicing GalleryENSG00000169955
Gene ExpressionZNF747 [ NCBI-GEO ]   ZNF747 [ EBI - ARRAY_EXPRESS ]   ZNF747 [ SEEK ]   ZNF747 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF747 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65988
GTEX Portal (Tissue expression)ZNF747
Human Protein AtlasENSG00000169955-ZNF747 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BV97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BV97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BV97
Splice isoforms : SwissVarQ9BV97
PhosPhoSitePlusQ9BV97
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  
Conserved Domain (NCBI)ZNF747
DMDM Disease mutations65988
Blocks (Seattle)ZNF747
SuperfamilyQ9BV97
Human Protein Atlas [tissue]ENSG00000169955-ZNF747 [tissue]
Peptide AtlasQ9BV97
HPRD14498
IPIIPI00028379   IPI00640657   IPI00921835   
Protein Interaction databases
DIP (DOE-UCLA)Q9BV97
IntAct (EBI)Q9BV97
FunCoupENSG00000169955
BioGRIDZNF747
STRING (EMBL)ZNF747
ZODIACZNF747
Ontologies - Pathways
QuickGOQ9BV97
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  nucleic acid binding  protein binding  regulation of transcription by RNA polymerase II  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  nucleic acid binding  protein binding  regulation of transcription by RNA polymerase II  
NDEx NetworkZNF747
Atlas of Cancer Signalling NetworkZNF747
Wikipedia pathwaysZNF747
Orthology - Evolution
OrthoDB65988
GeneTree (enSembl)ENSG00000169955
Phylogenetic Trees/Animal Genes : TreeFamZNF747
HOGENOMQ9BV97
Homologs : HomoloGeneZNF747
Homology/Alignments : Family Browser (UCSC)ZNF747
Gene fusions - Rearrangements
Fusion : QuiverZNF747
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF747 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF747
dbVarZNF747
ClinVarZNF747
1000_GenomesZNF747 
Exome Variant ServerZNF747
ExAC (Exome Aggregation Consortium)ENSG00000169955
GNOMAD BrowserENSG00000169955
Varsome BrowserZNF747
Genetic variants : HAPMAP65988
Genomic Variants (DGV)ZNF747 [DGVbeta]
DECIPHERZNF747 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF747 
Mutations
ICGC Data PortalZNF747 
TCGA Data PortalZNF747 
Broad Tumor PortalZNF747
OASIS PortalZNF747 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF747  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF747
Mutations and Diseases : HGMDZNF747
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF747
DgiDB (Drug Gene Interaction Database)ZNF747
DoCM (Curated mutations)ZNF747 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF747 (select a term)
intoGenZNF747
Cancer3DZNF747(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF747
MedgenZNF747
Genetic Testing Registry ZNF747
NextProtQ9BV97 [Medical]
TSGene65988
GENETestsZNF747
Target ValidationZNF747
Huge Navigator ZNF747 [HugePedia]
snp3D : Map Gene to Disease65988
BioCentury BCIQZNF747
ClinGenZNF747
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65988
Chemical/Pharm GKB GenePA144596521
Clinical trialZNF747
Miscellaneous
canSAR (ICR)ZNF747 (select the gene name)
DataMed IndexZNF747
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF747
EVEXZNF747
GoPubMedZNF747
iHOPZNF747
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:14:49 CEST 2019
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