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ZNF787 (zinc finger protein 787)

Identity

Other aliasTIP20
HGNC (Hugo) ZNF787
LocusID (NCBI) 126208
Atlas_Id 54817
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56102536 and ends at 56121373 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
WNK4 (17q21.31) / ZNF787 (19q13.43)ZNF787 (19q13.43) / E2F3 (6p22.3)ZNF787 (19q13.43) / POMT2 (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(17;19)(q21;q13) WNK4/ZNF787


External links

Nomenclature
HGNC (Hugo)ZNF787   26998
Cards
Entrez_Gene (NCBI)ZNF787  126208  zinc finger protein 787
AliasesTIP20
GeneCards (Weizmann)ZNF787
Ensembl hg19 (Hinxton)ENSG00000142409 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142409 [Gene_View]  ENSG00000142409 [Sequence]  chr19:56102536-56121373 [Contig_View]  ZNF787 [Vega]
ICGC DataPortalENSG00000142409
TCGA cBioPortalZNF787
AceView (NCBI)ZNF787
Genatlas (Paris)ZNF787
WikiGenes126208
SOURCE (Princeton)ZNF787
Genetics Home Reference (NIH)ZNF787
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF787  -     chr19:56102536-56121373 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF787  -     19q13.43   [Description]    (hg19-Feb_2009)
GoldenPathZNF787 - 19q13.43 [CytoView hg19]  ZNF787 - 19q13.43 [CytoView hg38]
ImmunoBaseENSG00000142409
Mapping of homologs : NCBIZNF787 [Mapview hg19]  ZNF787 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF000560 AI037960 BC012495 BC037737 BC058034
RefSeq transcript (Entrez)NM_001002836 NM_001351682
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF787
Cluster EST : UnigeneHs.397153 [ NCBI ]
CGAP (NCI)Hs.397153
Alternative Splicing GalleryENSG00000142409
Gene ExpressionZNF787 [ NCBI-GEO ]   ZNF787 [ EBI - ARRAY_EXPRESS ]   ZNF787 [ SEEK ]   ZNF787 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF787 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126208
GTEX Portal (Tissue expression)ZNF787
Human Protein AtlasENSG00000142409-ZNF787 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6DD87   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6DD87  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6DD87
Splice isoforms : SwissVarQ6DD87
PhosPhoSitePlusQ6DD87
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF787
DMDM Disease mutations126208
Blocks (Seattle)ZNF787
SuperfamilyQ6DD87
Human Protein Atlas [tissue]ENSG00000142409-ZNF787 [tissue]
Peptide AtlasQ6DD87
HPRD14032
IPIIPI00056880   
Protein Interaction databases
DIP (DOE-UCLA)Q6DD87
IntAct (EBI)Q6DD87
FunCoupENSG00000142409
BioGRIDZNF787
STRING (EMBL)ZNF787
ZODIACZNF787
Ontologies - Pathways
QuickGOQ6DD87
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF787
Atlas of Cancer Signalling NetworkZNF787
Wikipedia pathwaysZNF787
Orthology - Evolution
OrthoDB126208
GeneTree (enSembl)ENSG00000142409
Phylogenetic Trees/Animal Genes : TreeFamZNF787
HOGENOMQ6DD87
Homologs : HomoloGeneZNF787
Homology/Alignments : Family Browser (UCSC)ZNF787
Gene fusions - Rearrangements
Fusion : MitelmanWNK4/ZNF787 [17q21.31/19q13.43]  [t(17;19)(q21;q13)]  
Fusion : QuiverZNF787
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF787 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF787
dbVarZNF787
ClinVarZNF787
1000_GenomesZNF787 
Exome Variant ServerZNF787
ExAC (Exome Aggregation Consortium)ENSG00000142409
GNOMAD BrowserENSG00000142409
Varsome BrowserZNF787
Genetic variants : HAPMAP126208
Genomic Variants (DGV)ZNF787 [DGVbeta]
DECIPHERZNF787 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF787 
Mutations
ICGC Data PortalZNF787 
TCGA Data PortalZNF787 
Broad Tumor PortalZNF787
OASIS PortalZNF787 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF787  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF787
Mutations and Diseases : HGMDZNF787
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF787
DgiDB (Drug Gene Interaction Database)ZNF787
DoCM (Curated mutations)ZNF787 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF787 (select a term)
intoGenZNF787
Cancer3DZNF787(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF787
MedgenZNF787
Genetic Testing Registry ZNF787
NextProtQ6DD87 [Medical]
TSGene126208
GENETestsZNF787
Target ValidationZNF787
Huge Navigator ZNF787 [HugePedia]
snp3D : Map Gene to Disease126208
BioCentury BCIQZNF787
ClinGenZNF787
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126208
Chemical/Pharm GKB GenePA162410481
Clinical trialZNF787
Miscellaneous
canSAR (ICR)ZNF787 (select the gene name)
DataMed IndexZNF787
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF787
EVEXZNF787
GoPubMedZNF787
iHOPZNF787
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:16:32 CET 2019

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