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ZNF788P (zinc finger family member 788, pseudogene)

Identity

Other aliasZNF788
HGNC (Hugo) ZNF788P
LocusID (NCBI) 388507
Atlas_Id 80449
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12092263 and ends at 12114752 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ZNF788P   33112
Cards
Entrez_Gene (NCBI)ZNF788P  388507  zinc finger family member 788, pseudogene
AliasesZNF788
GeneCards (Weizmann)ZNF788P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr19:12092263-12114752 [Contig_View]  ZNF788P [Vega]
TCGA cBioPortalZNF788P
AceView (NCBI)ZNF788P
Genatlas (Paris)ZNF788P
WikiGenes388507
SOURCE (Princeton)ZNF788P
Genetics Home Reference (NIH)ZNF788P
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF788P  -     chr19:12092263-12114752 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF788P  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathZNF788P - 19p13.2 [CytoView hg19]  ZNF788P - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF788P [Mapview hg19]  ZNF788P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI478464 AK128282 AK128700 BM781919 CN263918
RefSeq transcript (Entrez)NM_001004314 NM_001348163 NM_001348164 NM_001348165
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF788P
Cluster EST : UnigeneHs.127473 [ NCBI ]
CGAP (NCI)Hs.127473
Gene ExpressionZNF788P [ NCBI-GEO ]   ZNF788P [ EBI - ARRAY_EXPRESS ]   ZNF788P [ SEEK ]   ZNF788P [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF788P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388507
GTEX Portal (Tissue expression)ZNF788P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZQV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZQV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZQV5
Splice isoforms : SwissVarQ6ZQV5
PhosPhoSitePlusQ6ZQV5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  
Conserved Domain (NCBI)ZNF788P
DMDM Disease mutations388507
Blocks (Seattle)ZNF788P
SuperfamilyQ6ZQV5
Peptide AtlasQ6ZQV5
IPIIPI00418724   IPI00956628   IPI00873800   IPI00926142   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZQV5
IntAct (EBI)Q6ZQV5
BioGRIDZNF788P
STRING (EMBL)ZNF788P
ZODIACZNF788P
Ontologies - Pathways
QuickGOQ6ZQV5
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  nucleic acid binding  nucleus  regulation of transcription by RNA polymerase II  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  nucleic acid binding  nucleus  regulation of transcription by RNA polymerase II  
NDEx NetworkZNF788P
Atlas of Cancer Signalling NetworkZNF788P
Wikipedia pathwaysZNF788P
Orthology - Evolution
OrthoDB388507
Phylogenetic Trees/Animal Genes : TreeFamZNF788P
HOGENOMQ6ZQV5
Homologs : HomoloGeneZNF788P
Homology/Alignments : Family Browser (UCSC)ZNF788P
Gene fusions - Rearrangements
Fusion : QuiverZNF788P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF788P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF788P
dbVarZNF788P
ClinVarZNF788P
1000_GenomesZNF788P 
Exome Variant ServerZNF788P
Varsome BrowserZNF788P
Genetic variants : HAPMAP388507
Genomic Variants (DGV)ZNF788P [DGVbeta]
DECIPHERZNF788P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF788P 
Mutations
ICGC Data PortalZNF788P 
TCGA Data PortalZNF788P 
Broad Tumor PortalZNF788P
OASIS PortalZNF788P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF788P
BioMutasearch ZNF788P
DgiDB (Drug Gene Interaction Database)ZNF788P
DoCM (Curated mutations)ZNF788P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF788P (select a term)
intoGenZNF788P
Cancer3DZNF788P(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF788P
MedgenZNF788P
Genetic Testing Registry ZNF788P
NextProtQ6ZQV5 [Medical]
TSGene388507
GENETestsZNF788P
Target ValidationZNF788P
Huge Navigator ZNF788P [HugePedia]
snp3D : Map Gene to Disease388507
BioCentury BCIQZNF788P
ClinGenZNF788P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388507
Chemical/Pharm GKB GenePA166049010
Clinical trialZNF788P
Miscellaneous
canSAR (ICR)ZNF788P (select the gene name)
DataMed IndexZNF788P
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF788P
EVEXZNF788P
GoPubMedZNF788P
iHOPZNF788P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:14:55 CEST 2019

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