Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF821 (zinc finger protein 821)

Identity

Other alias-
HGNC (Hugo) ZNF821
LocusID (NCBI) 55565
Atlas_Id 76428
Location 16q22.2  [Link to chromosome band 16q22]
Location_base_pair Starts at 71859680 and ends at 71884190 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM68 (8q12.1) / ZNF821 (16q22.2)ZNF821 (16q22.2) / CHD9 (16q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF821   28043
Cards
Entrez_Gene (NCBI)ZNF821  55565  zinc finger protein 821
Aliases
GeneCards (Weizmann)ZNF821
Ensembl hg19 (Hinxton)ENSG00000102984 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102984 [Gene_View]  ENSG00000102984 [Sequence]  chr16:71859680-71884190 [Contig_View]  ZNF821 [Vega]
ICGC DataPortalENSG00000102984
TCGA cBioPortalZNF821
AceView (NCBI)ZNF821
Genatlas (Paris)ZNF821
WikiGenes55565
SOURCE (Princeton)ZNF821
Genetics Home Reference (NIH)ZNF821
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF821  -     chr16:71859680-71884190 -  16q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF821  -     16q22.2   [Description]    (hg19-Feb_2009)
GoldenPathZNF821 - 16q22.2 [CytoView hg19]  ZNF821 - 16q22.2 [CytoView hg38]
ImmunoBaseENSG00000102984
Mapping of homologs : NCBIZNF821 [Mapview hg19]  ZNF821 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF070588 AK131336 AK296603 AK313693 AL538838
RefSeq transcript (Entrez)NM_001201552 NM_001201553 NM_001201554 NM_001201556 NM_001318238 NM_001318239 NM_017530
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF821
Cluster EST : UnigeneHs.744055 [ NCBI ]
CGAP (NCI)Hs.744055
Alternative Splicing GalleryENSG00000102984
Gene ExpressionZNF821 [ NCBI-GEO ]   ZNF821 [ EBI - ARRAY_EXPRESS ]   ZNF821 [ SEEK ]   ZNF821 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF821 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55565
GTEX Portal (Tissue expression)ZNF821
Human Protein AtlasENSG00000102984-ZNF821 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75541   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75541  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75541
Splice isoforms : SwissVarO75541
PhosPhoSitePlusO75541
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF821
DMDM Disease mutations55565
Blocks (Seattle)ZNF821
SuperfamilyO75541
Human Protein Atlas [tissue]ENSG00000102984-ZNF821 [tissue]
Peptide AtlasO75541
HPRD14244
IPIIPI00885049   IPI00941564   IPI00784067   IPI00979481   
Protein Interaction databases
DIP (DOE-UCLA)O75541
IntAct (EBI)O75541
FunCoupENSG00000102984
BioGRIDZNF821
STRING (EMBL)ZNF821
ZODIACZNF821
Ontologies - Pathways
QuickGOO75541
Ontology : AmiGODNA-binding transcription factor activity  protein binding  nucleoplasm  transcription regulatory region DNA binding  positive regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity  protein binding  nucleoplasm  transcription regulatory region DNA binding  positive regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF821
Atlas of Cancer Signalling NetworkZNF821
Wikipedia pathwaysZNF821
Orthology - Evolution
OrthoDB55565
GeneTree (enSembl)ENSG00000102984
Phylogenetic Trees/Animal Genes : TreeFamZNF821
HOGENOMO75541
Homologs : HomoloGeneZNF821
Homology/Alignments : Family Browser (UCSC)ZNF821
Gene fusions - Rearrangements
Fusion : QuiverZNF821
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF821 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF821
dbVarZNF821
ClinVarZNF821
1000_GenomesZNF821 
Exome Variant ServerZNF821
ExAC (Exome Aggregation Consortium)ENSG00000102984
GNOMAD BrowserENSG00000102984
Varsome BrowserZNF821
Genetic variants : HAPMAP55565
Genomic Variants (DGV)ZNF821 [DGVbeta]
DECIPHERZNF821 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF821 
Mutations
ICGC Data PortalZNF821 
TCGA Data PortalZNF821 
Broad Tumor PortalZNF821
OASIS PortalZNF821 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF821  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF821
Mutations and Diseases : HGMDZNF821
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF821
DgiDB (Drug Gene Interaction Database)ZNF821
DoCM (Curated mutations)ZNF821 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF821 (select a term)
intoGenZNF821
Cancer3DZNF821(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF821
MedgenZNF821
Genetic Testing Registry ZNF821
NextProtO75541 [Medical]
TSGene55565
GENETestsZNF821
Target ValidationZNF821
Huge Navigator ZNF821 [HugePedia]
snp3D : Map Gene to Disease55565
BioCentury BCIQZNF821
ClinGenZNF821
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55565
Chemical/Pharm GKB GenePA162410689
Clinical trialZNF821
Miscellaneous
canSAR (ICR)ZNF821 (select the gene name)
DataMed IndexZNF821
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF821
EVEXZNF821
GoPubMedZNF821
iHOPZNF821
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:15:00 CEST 2019
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