Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF84 (zinc finger protein 84)

Identity

Alias (NCBI)HPF2
HGNC (Hugo) ZNF84
HGNC Alias symbHPF2
HGNC Previous namezinc finger protein 84 (HPF2)
LocusID (NCBI) 7637
Atlas_Id 76439
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 133037286 and ends at 133063304 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF84   13159
Cards
Entrez_Gene (NCBI)ZNF84  7637  zinc finger protein 84
AliasesHPF2
GeneCards (Weizmann)ZNF84
Ensembl hg19 (Hinxton)ENSG00000198040 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198040 [Gene_View]  ENSG00000198040 [Sequence]  chr12:133037286-133063304 [Contig_View]  ZNF84 [Vega]
ICGC DataPortalENSG00000198040
TCGA cBioPortalZNF84
AceView (NCBI)ZNF84
Genatlas (Paris)ZNF84
WikiGenes7637
SOURCE (Princeton)ZNF84
Genetics Home Reference (NIH)ZNF84
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF84  -     chr12:133037286-133063304 +  12q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF84  -     12q24.33   [Description]    (hg19-Feb_2009)
GoldenPathZNF84 - 12q24.33 [CytoView hg19]  ZNF84 - 12q24.33 [CytoView hg38]
ImmunoBaseENSG00000198040
genome Data Viewer NCBIZNF84 [Mapview hg19]  
OMIM618554   
Gene and transcription
Genbank (Entrez)AA679683 AK054847 AK055603 AK314232 AW665289
RefSeq transcript (Entrez)NM_001127372 NM_001289971 NM_001289972 NM_003428
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF84
Alternative Splicing GalleryENSG00000198040
Gene ExpressionZNF84 [ NCBI-GEO ]   ZNF84 [ EBI - ARRAY_EXPRESS ]   ZNF84 [ SEEK ]   ZNF84 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF84 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF84 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7637
GTEX Portal (Tissue expression)ZNF84
Human Protein AtlasENSG00000198040-ZNF84 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51523   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51523  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51523
Splice isoforms : SwissVarP51523
PhosPhoSitePlusP51523
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF84
DMDM Disease mutations7637
Blocks (Seattle)ZNF84
SuperfamilyP51523
Human Protein Atlas [tissue]ENSG00000198040-ZNF84 [tissue]
Peptide AtlasP51523
HPRD15891
IPIIPI00333480   IPI01014722   IPI01015647   IPI01013633   IPI01013979   IPI01011508   IPI01012433   IPI01011012   IPI01009833   
Protein Interaction databases
DIP (DOE-UCLA)P51523
IntAct (EBI)P51523
FunCoupENSG00000198040
BioGRIDZNF84
STRING (EMBL)ZNF84
ZODIACZNF84
Ontologies - Pathways
QuickGOP51523
Ontology : AmiGODNA binding  nucleus  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  nucleus  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkZNF84
Atlas of Cancer Signalling NetworkZNF84
Wikipedia pathwaysZNF84
Orthology - Evolution
OrthoDB7637
GeneTree (enSembl)ENSG00000198040
Phylogenetic Trees/Animal Genes : TreeFamZNF84
HOGENOMP51523
Homologs : HomoloGeneZNF84
Homology/Alignments : Family Browser (UCSC)ZNF84
Gene fusions - Rearrangements
Fusion : QuiverZNF84
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF84 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF84
dbVarZNF84
ClinVarZNF84
1000_GenomesZNF84 
Exome Variant ServerZNF84
GNOMAD BrowserENSG00000198040
Varsome BrowserZNF84
Genetic variants : HAPMAP7637
Genomic Variants (DGV)ZNF84 [DGVbeta]
DECIPHERZNF84 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF84 
Mutations
ICGC Data PortalZNF84 
TCGA Data PortalZNF84 
Broad Tumor PortalZNF84
OASIS PortalZNF84 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF84  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF84
Mutations and Diseases : HGMDZNF84
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF84
DgiDB (Drug Gene Interaction Database)ZNF84
DoCM (Curated mutations)ZNF84 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF84 (select a term)
intoGenZNF84
Cancer3DZNF84(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618554   
Orphanet
DisGeNETZNF84
MedgenZNF84
Genetic Testing Registry ZNF84
NextProtP51523 [Medical]
TSGene7637
GENETestsZNF84
Target ValidationZNF84
Huge Navigator ZNF84 [HugePedia]
snp3D : Map Gene to Disease7637
BioCentury BCIQZNF84
ClinGenZNF84
Clinical trials, drugs, therapy
Protein Interactions : CTD7637
Pharm GKB GenePA37732
Clinical trialZNF84
Miscellaneous
canSAR (ICR)ZNF84 (select the gene name)
HarmonizomeZNF84
DataMed IndexZNF84
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF84
EVEXZNF84
GoPubMedZNF84
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:37:32 CEST 2020

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