Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF93 (zinc finger protein 93)

Identity

Alias_namesZNF505
zinc finger protein 505
zinc finger protein 93 (HTF34)
Alias_symbol (synonym)HPF34
TF34
FLJ12488
Other aliasHTF34
HGNC (Hugo) ZNF93
LocusID (NCBI) 81931
Atlas_Id 76462
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 19900913 and ends at 19935573 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AP1M1 (19p13.11) / ZNF93 (19p12)CD46 (1q32.2) / ZNF93 (19p12)ZNF93 (19p12) / AP2A2 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(19;19)(p12;p13) AP1M1/ZNF93

External links

Nomenclature
HGNC (Hugo)ZNF93   13169
Cards
Entrez_Gene (NCBI)ZNF93  81931  zinc finger protein 93
AliasesHPF34; HTF34; TF34; ZNF505
GeneCards (Weizmann)ZNF93
Ensembl hg19 (Hinxton)ENSG00000184635 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184635 [Gene_View]  ENSG00000184635 [Sequence]  chr19:19900913-19935573 [Contig_View]  ZNF93 [Vega]
ICGC DataPortalENSG00000184635
TCGA cBioPortalZNF93
AceView (NCBI)ZNF93
Genatlas (Paris)ZNF93
WikiGenes81931
SOURCE (Princeton)ZNF93
Genetics Home Reference (NIH)ZNF93
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF93  -     chr19:19900913-19935573 +  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF93  -     19p12   [Description]    (hg19-Feb_2009)
GoldenPathZNF93 - 19p12 [CytoView hg19]  ZNF93 - 19p12 [CytoView hg38]
ImmunoBaseENSG00000184635
Mapping of homologs : NCBIZNF93 [Mapview hg19]  ZNF93 [Mapview hg38]
OMIM603975   
Gene and transcription
Genbank (Entrez)AK022550 AK096342 AK295921 BC020837 BC038096
RefSeq transcript (Entrez)NM_001004126 NM_031218
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF93
Alternative Splicing GalleryENSG00000184635
Gene ExpressionZNF93 [ NCBI-GEO ]   ZNF93 [ EBI - ARRAY_EXPRESS ]   ZNF93 [ SEEK ]   ZNF93 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF93 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81931
GTEX Portal (Tissue expression)ZNF93
Human Protein AtlasENSG00000184635-ZNF93 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35789   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP35789  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP35789
Splice isoforms : SwissVarP35789
PhosPhoSitePlusP35789
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type    Znf_PRDM5-like   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF93
DMDM Disease mutations81931
Blocks (Seattle)ZNF93
SuperfamilyP35789
Human Protein Atlas [tissue]ENSG00000184635-ZNF93 [tissue]
Peptide AtlasP35789
HPRD10334
IPIIPI00384789   IPI00552967   IPI00396397   IPI00943110   
Protein Interaction databases
DIP (DOE-UCLA)P35789
IntAct (EBI)P35789
FunCoupENSG00000184635
BioGRIDZNF93
STRING (EMBL)ZNF93
ZODIACZNF93
Ontologies - Pathways
QuickGOP35789
Ontology : AmiGOtranscription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity  DNA-binding transcription factor activity  nucleus  zinc ion binding  negative regulation of transcription, DNA-templated  negative regulation of transposon integration  
Ontology : EGO-EBItranscription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity  DNA-binding transcription factor activity  nucleus  zinc ion binding  negative regulation of transcription, DNA-templated  negative regulation of transposon integration  
NDEx NetworkZNF93
Atlas of Cancer Signalling NetworkZNF93
Wikipedia pathwaysZNF93
Orthology - Evolution
OrthoDB81931
GeneTree (enSembl)ENSG00000184635
Phylogenetic Trees/Animal Genes : TreeFamZNF93
HOGENOMP35789
Homologs : HomoloGeneZNF93
Homology/Alignments : Family Browser (UCSC)ZNF93
Gene fusions - Rearrangements
Fusion : QuiverZNF93
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF93 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF93
dbVarZNF93
ClinVarZNF93
1000_GenomesZNF93 
Exome Variant ServerZNF93
ExAC (Exome Aggregation Consortium)ENSG00000184635
GNOMAD BrowserENSG00000184635
Varsome BrowserZNF93
Genetic variants : HAPMAP81931
Genomic Variants (DGV)ZNF93 [DGVbeta]
DECIPHERZNF93 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF93 
Mutations
ICGC Data PortalZNF93 
TCGA Data PortalZNF93 
Broad Tumor PortalZNF93
OASIS PortalZNF93 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF93  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF93
Mutations and Diseases : HGMDZNF93
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF93
DgiDB (Drug Gene Interaction Database)ZNF93
DoCM (Curated mutations)ZNF93 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF93 (select a term)
intoGenZNF93
Cancer3DZNF93(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603975   
Orphanet
DisGeNETZNF93
MedgenZNF93
Genetic Testing Registry ZNF93
NextProtP35789 [Medical]
TSGene81931
GENETestsZNF93
Target ValidationZNF93
Huge Navigator ZNF93 [HugePedia]
snp3D : Map Gene to Disease81931
BioCentury BCIQZNF93
ClinGenZNF93
Clinical trials, drugs, therapy
Protein Interactions : CTD81931
Pharm GKB GenePA37741
Clinical trialZNF93
Miscellaneous
canSAR (ICR)ZNF93 (select the gene name)
HarmonizomeZNF93
DataMed IndexZNF93
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF93
EVEXZNF93
GoPubMedZNF93
iHOPZNF93
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Jun 30 20:08:04 CEST 2020
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