Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNRD2 (zinc ribbon domain containing 2)

Identity

Alias_namesSSSCA1
Sjogren's syndrome/scleroderma autoantigen 1
Sjogren syndrome/scleroderma autoantigen 1
Alias_symbol (synonym)p27
Other alias
HGNC (Hugo) ZNRD2
LocusID (NCBI) 10534
Atlas_Id 52356
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65570459 and ends at 65571888 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ZNRD2   11328
Cards
Entrez_Gene (NCBI)ZNRD2  10534  zinc ribbon domain containing 2
AliasesSSSCA1; p27
GeneCards (Weizmann)ZNRD2
Ensembl hg19 (Hinxton)ENSG00000173465 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173465 [Gene_View]  ENSG00000173465 [Sequence]  chr11:65570459-65571888 [Contig_View]  ZNRD2 [Vega]
ICGC DataPortalENSG00000173465
TCGA cBioPortalZNRD2
AceView (NCBI)ZNRD2
Genatlas (Paris)ZNRD2
WikiGenes10534
SOURCE (Princeton)ZNRD2
Genetics Home Reference (NIH)ZNRD2
Genomic and cartography
GoldenPath hg38 (UCSC)ZNRD2  -     chr11:65570459-65571888 +  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNRD2  -     -   [Description]    (hg19-Feb_2009)
GoldenPathZNRD2 - - [CytoView hg19]  ZNRD2 - - [CytoView hg38]
ImmunoBaseENSG00000173465
Mapping of homologs : NCBIZNRD2 [Mapview hg19]  ZNRD2 [Mapview hg38]
OMIM606044   
Gene and transcription
Genbank (Entrez)AB001740 BC014791 BP351453 DR759640
RefSeq transcript (Entrez)NM_001303024 NM_006396
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNRD2
Cluster EST : UnigeneHs.25723 [ NCBI ]
CGAP (NCI)Hs.25723
Alternative Splicing GalleryENSG00000173465
Gene ExpressionZNRD2 [ NCBI-GEO ]   ZNRD2 [ EBI - ARRAY_EXPRESS ]   ZNRD2 [ SEEK ]   ZNRD2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNRD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10534
GTEX Portal (Tissue expression)ZNRD2
Human Protein AtlasENSG00000173465-ZNRD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60232   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60232  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60232
Splice isoforms : SwissVarO60232
PhosPhoSitePlusO60232
Domains : Interpro (EBI)SSSCA1   
Domain families : Pfam (Sanger)Auto_anti-p27 (PF06677)   
Domain families : Pfam (NCBI)pfam06677   
Conserved Domain (NCBI)ZNRD2
DMDM Disease mutations10534
Blocks (Seattle)ZNRD2
SuperfamilyO60232
Human Protein Atlas [tissue]ENSG00000173465-ZNRD2 [tissue]
Peptide AtlasO60232
HPRD06921
IPIIPI00028412   IPI00976464   IPI00975658   IPI00985077   IPI00977126   IPI00977633   
Protein Interaction databases
DIP (DOE-UCLA)O60232
IntAct (EBI)O60232
FunCoupENSG00000173465
BioGRIDZNRD2
STRING (EMBL)ZNRD2
ZODIACZNRD2
Ontologies - Pathways
QuickGOO60232
Ontology : AmiGOmitotic cell cycle  protein binding  cell division  
Ontology : EGO-EBImitotic cell cycle  protein binding  cell division  
NDEx NetworkZNRD2
Atlas of Cancer Signalling NetworkZNRD2
Wikipedia pathwaysZNRD2
Orthology - Evolution
OrthoDB10534
GeneTree (enSembl)ENSG00000173465
Phylogenetic Trees/Animal Genes : TreeFamZNRD2
HOGENOMO60232
Homologs : HomoloGeneZNRD2
Homology/Alignments : Family Browser (UCSC)ZNRD2
Gene fusions - Rearrangements
Fusion : QuiverZNRD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNRD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNRD2
dbVarZNRD2
ClinVarZNRD2
1000_GenomesZNRD2 
Exome Variant ServerZNRD2
ExAC (Exome Aggregation Consortium)ENSG00000173465
GNOMAD BrowserENSG00000173465
Varsome BrowserZNRD2
Genetic variants : HAPMAP10534
Genomic Variants (DGV)ZNRD2 [DGVbeta]
DECIPHERZNRD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNRD2 
Mutations
ICGC Data PortalZNRD2 
TCGA Data PortalZNRD2 
Broad Tumor PortalZNRD2
OASIS PortalZNRD2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNRD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNRD2
DgiDB (Drug Gene Interaction Database)ZNRD2
DoCM (Curated mutations)ZNRD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNRD2 (select a term)
intoGenZNRD2
Cancer3DZNRD2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606044   
Orphanet
DisGeNETZNRD2
MedgenZNRD2
Genetic Testing Registry ZNRD2
NextProtO60232 [Medical]
TSGene10534
GENETestsZNRD2
Target ValidationZNRD2
Huge Navigator ZNRD2 [HugePedia]
snp3D : Map Gene to Disease10534
BioCentury BCIQZNRD2
ClinGenZNRD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10534
Chemical/Pharm GKB GenePA36152
Clinical trialZNRD2
Miscellaneous
canSAR (ICR)ZNRD2 (select the gene name)
DataMed IndexZNRD2
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNRD2
EVEXZNRD2
GoPubMedZNRD2
iHOPZNRD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:16:34 CET 2019

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