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ZSCAN5C (zinc finger and SCAN domain containing 5C)

Identity

Other aliasZNF495C
ZSCAN5CP
HGNC (Hugo) ZSCAN5C
LocusID (NCBI) 649137
Atlas_Id 80462
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56205914 and ends at 56209200 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ZSCAN5C   34294
Cards
Entrez_Gene (NCBI)ZSCAN5C  649137  zinc finger and SCAN domain containing 5C
AliasesZNF495C; ZSCAN5CP
GeneCards (Weizmann)ZSCAN5C
Ensembl hg19 (Hinxton)ENSG00000204532 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204532 [Gene_View]  ENSG00000204532 [Sequence]  chr19:56205914-56209200 [Contig_View]  ZSCAN5C [Vega]
ICGC DataPortalENSG00000204532
TCGA cBioPortalZSCAN5C
AceView (NCBI)ZSCAN5C
Genatlas (Paris)ZSCAN5C
WikiGenes649137
SOURCE (Princeton)ZSCAN5C
Genetics Home Reference (NIH)ZSCAN5C
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN5C  -     chr19:56205914-56209200 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN5C  -     19q13.43   [Description]    (hg19-Feb_2009)
GoldenPathZSCAN5C - 19q13.43 [CytoView hg19]  ZSCAN5C - 19q13.43 [CytoView hg38]
ImmunoBaseENSG00000204532
Mapping of homologs : NCBIZSCAN5C [Mapview hg19]  ZSCAN5C [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001358413
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN5C
Alternative Splicing GalleryENSG00000204532
Gene ExpressionZSCAN5C [ NCBI-GEO ]   ZSCAN5C [ EBI - ARRAY_EXPRESS ]   ZSCAN5C [ SEEK ]   ZSCAN5C [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN5C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)649137
GTEX Portal (Tissue expression)ZSCAN5C
Human Protein AtlasENSG00000204532-ZSCAN5C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGD5
Splice isoforms : SwissVarA6NGD5
PhosPhoSitePlusA6NGD5
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)SCAN_dom    SCAN_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN5C
DMDM Disease mutations649137
Blocks (Seattle)ZSCAN5C
SuperfamilyA6NGD5
Human Protein Atlas [tissue]ENSG00000204532-ZSCAN5C [tissue]
Peptide AtlasA6NGD5
IPIIPI00247125   
Protein Interaction databases
DIP (DOE-UCLA)A6NGD5
IntAct (EBI)A6NGD5
FunCoupENSG00000204532
BioGRIDZSCAN5C
STRING (EMBL)ZSCAN5C
ZODIACZSCAN5C
Ontologies - Pathways
QuickGOA6NGD5
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  nucleic acid binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  nucleic acid binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZSCAN5C
Atlas of Cancer Signalling NetworkZSCAN5C
Wikipedia pathwaysZSCAN5C
Orthology - Evolution
OrthoDB649137
GeneTree (enSembl)ENSG00000204532
Phylogenetic Trees/Animal Genes : TreeFamZSCAN5C
HOGENOMA6NGD5
Homologs : HomoloGeneZSCAN5C
Homology/Alignments : Family Browser (UCSC)ZSCAN5C
Gene fusions - Rearrangements
Fusion : QuiverZSCAN5C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN5C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN5C
dbVarZSCAN5C
ClinVarZSCAN5C
1000_GenomesZSCAN5C 
Exome Variant ServerZSCAN5C
ExAC (Exome Aggregation Consortium)ENSG00000204532
GNOMAD BrowserENSG00000204532
Varsome BrowserZSCAN5C
Genetic variants : HAPMAP649137
Genomic Variants (DGV)ZSCAN5C [DGVbeta]
DECIPHERZSCAN5C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN5C 
Mutations
ICGC Data PortalZSCAN5C 
TCGA Data PortalZSCAN5C 
Broad Tumor PortalZSCAN5C
OASIS PortalZSCAN5C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN5C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZSCAN5C
Mutations and Diseases : HGMDZSCAN5C
BioMutasearch ZSCAN5C
DgiDB (Drug Gene Interaction Database)ZSCAN5C
DoCM (Curated mutations)ZSCAN5C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN5C (select a term)
intoGenZSCAN5C
Cancer3DZSCAN5C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZSCAN5C
MedgenZSCAN5C
Genetic Testing Registry ZSCAN5C
NextProtA6NGD5 [Medical]
TSGene649137
GENETestsZSCAN5C
Target ValidationZSCAN5C
Huge Navigator ZSCAN5C [HugePedia]
snp3D : Map Gene to Disease649137
BioCentury BCIQZSCAN5C
ClinGenZSCAN5C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD649137
Chemical/Pharm GKB GenePA162411044
Clinical trialZSCAN5C
Miscellaneous
canSAR (ICR)ZSCAN5C (select the gene name)
DataMed IndexZSCAN5C
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN5C
EVEXZSCAN5C
GoPubMedZSCAN5C
iHOPZSCAN5C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:15:13 CEST 2019

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