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ZUP1 (zinc finger containing ubiquitin peptidase 1)

Identity

Other aliasC6orf113
DUB
ZUFSP
HGNC (Hugo) ZUP1
LocusID (NCBI) 221302
Atlas_Id 80390
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116635618 and ends at 116668810 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ZUP1   21224
Cards
Entrez_Gene (NCBI)ZUP1  221302  zinc finger containing ubiquitin peptidase 1
AliasesC6orf113; DUB; ZUFSP
GeneCards (Weizmann)ZUP1
Ensembl hg19 (Hinxton)ENSG00000153975 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153975 [Gene_View]  ENSG00000153975 [Sequence]  chr6:116635618-116668810 [Contig_View]  ZUP1 [Vega]
ICGC DataPortalENSG00000153975
TCGA cBioPortalZUP1
AceView (NCBI)ZUP1
Genatlas (Paris)ZUP1
WikiGenes221302
SOURCE (Princeton)ZUP1
Genetics Home Reference (NIH)ZUP1
Genomic and cartography
GoldenPath hg38 (UCSC)ZUP1  -     chr6:116635618-116668810 -  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZUP1  -     6q22.1   [Description]    (hg19-Feb_2009)
GoldenPathZUP1 - 6q22.1 [CytoView hg19]  ZUP1 - 6q22.1 [CytoView hg38]
ImmunoBaseENSG00000153975
Mapping of homologs : NCBIZUP1 [Mapview hg19]  ZUP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054582 AK307523 BC016879 BX537872 DB461344
RefSeq transcript (Entrez)NM_001361189 NM_001361190 NM_001361191 NM_145062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZUP1
Cluster EST : UnigeneHs.29857 [ NCBI ]
CGAP (NCI)Hs.29857
Alternative Splicing GalleryENSG00000153975
Gene ExpressionZUP1 [ NCBI-GEO ]   ZUP1 [ EBI - ARRAY_EXPRESS ]   ZUP1 [ SEEK ]   ZUP1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZUP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221302
GTEX Portal (Tissue expression)ZUP1
Human Protein AtlasENSG00000153975-ZUP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AP4
Splice isoforms : SwissVarQ96AP4
PhosPhoSitePlusQ96AP4
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Peptidase_C78_UfSP1/2    Znf_C2H2_type   
Domain families : Pfam (Sanger)Peptidase_C78 (PF07910)   
Domain families : Pfam (NCBI)pfam07910   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZUP1
DMDM Disease mutations221302
Blocks (Seattle)ZUP1
PDB (RSDB)6EI1   
PDB Europe6EI1   
PDB (PDBSum)6EI1   
PDB (IMB)6EI1   
Structural Biology KnowledgeBase6EI1   
SCOP (Structural Classification of Proteins)6EI1   
CATH (Classification of proteins structures)6EI1   
SuperfamilyQ96AP4
Human Protein Atlas [tissue]ENSG00000153975-ZUP1 [tissue]
Peptide AtlasQ96AP4
IPIIPI00303160   IPI00761141   IPI00514933   
Protein Interaction databases
DIP (DOE-UCLA)Q96AP4
IntAct (EBI)Q96AP4
FunCoupENSG00000153975
BioGRIDZUP1
STRING (EMBL)ZUP1
ZODIACZUP1
Ontologies - Pathways
QuickGOQ96AP4
Ontology : AmiGOnucleic acid binding  protein binding  nucleus  cytoplasm  proteolysis  thiol-dependent ubiquitinyl hydrolase activity  metal ion binding  
Ontology : EGO-EBInucleic acid binding  protein binding  nucleus  cytoplasm  proteolysis  thiol-dependent ubiquitinyl hydrolase activity  metal ion binding  
NDEx NetworkZUP1
Atlas of Cancer Signalling NetworkZUP1
Wikipedia pathwaysZUP1
Orthology - Evolution
OrthoDB221302
GeneTree (enSembl)ENSG00000153975
Phylogenetic Trees/Animal Genes : TreeFamZUP1
HOGENOMQ96AP4
Homologs : HomoloGeneZUP1
Homology/Alignments : Family Browser (UCSC)ZUP1
Gene fusions - Rearrangements
Fusion : QuiverZUP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZUP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZUP1
dbVarZUP1
ClinVarZUP1
1000_GenomesZUP1 
Exome Variant ServerZUP1
ExAC (Exome Aggregation Consortium)ENSG00000153975
GNOMAD BrowserENSG00000153975
Varsome BrowserZUP1
Genetic variants : HAPMAP221302
Genomic Variants (DGV)ZUP1 [DGVbeta]
DECIPHERZUP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZUP1 
Mutations
ICGC Data PortalZUP1 
TCGA Data PortalZUP1 
Broad Tumor PortalZUP1
OASIS PortalZUP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZUP1
BioMutasearch ZUP1
DgiDB (Drug Gene Interaction Database)ZUP1
DoCM (Curated mutations)ZUP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZUP1 (select a term)
intoGenZUP1
Cancer3DZUP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZUP1
MedgenZUP1
Genetic Testing Registry ZUP1
NextProtQ96AP4 [Medical]
TSGene221302
GENETestsZUP1
Target ValidationZUP1
Huge Navigator ZUP1 [HugePedia]
snp3D : Map Gene to Disease221302
BioCentury BCIQZUP1
ClinGenZUP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221302
Chemical/Pharm GKB GenePA162411072
Clinical trialZUP1
Miscellaneous
canSAR (ICR)ZUP1 (select the gene name)
DataMed IndexZUP1
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZUP1
EVEXZUP1
GoPubMedZUP1
iHOPZUP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:15:15 CEST 2019

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