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ZXDA (zinc finger X-linked duplicated A)

Identity

Alias_symbol (synonym)ZNF896
Other alias
HGNC (Hugo) ZXDA
LocusID (NCBI) 7789
Atlas_Id 76514
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 57905430 and ends at 57910633 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZXDA   13198
Cards
Entrez_Gene (NCBI)ZXDA  7789  zinc finger X-linked duplicated A
AliasesZNF896
GeneCards (Weizmann)ZXDA
Ensembl hg19 (Hinxton)ENSG00000198205 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198205 [Gene_View]  ENSG00000198205 [Sequence]  chrX:57905430-57910633 [Contig_View]  ZXDA [Vega]
ICGC DataPortalENSG00000198205
TCGA cBioPortalZXDA
AceView (NCBI)ZXDA
Genatlas (Paris)ZXDA
WikiGenes7789
SOURCE (Princeton)ZXDA
Genetics Home Reference (NIH)ZXDA
Genomic and cartography
GoldenPath hg38 (UCSC)ZXDA  -     chrX:57905430-57910633 -  Xp11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZXDA  -     Xp11.21   [Description]    (hg19-Feb_2009)
GoldenPathZXDA - Xp11.21 [CytoView hg19]  ZXDA - Xp11.21 [CytoView hg38]
ImmunoBaseENSG00000198205
Mapping of homologs : NCBIZXDA [Mapview hg19]  ZXDA [Mapview hg38]
OMIM300235   
Gene and transcription
Genbank (Entrez)AK122815 AK292686 BC059356 L14787
RefSeq transcript (Entrez)NM_007156
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZXDA
Cluster EST : UnigeneHs.550094 [ NCBI ]
CGAP (NCI)Hs.550094
Alternative Splicing GalleryENSG00000198205
Gene ExpressionZXDA [ NCBI-GEO ]   ZXDA [ EBI - ARRAY_EXPRESS ]   ZXDA [ SEEK ]   ZXDA [ MEM ]
Gene Expression Viewer (FireBrowse)ZXDA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7789
GTEX Portal (Tissue expression)ZXDA
Human Protein AtlasENSG00000198205-ZXDA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP98168   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP98168  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP98168
Splice isoforms : SwissVarP98168
PhosPhoSitePlusP98168
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZXDA
DMDM Disease mutations7789
Blocks (Seattle)ZXDA
SuperfamilyP98168
Human Protein Atlas [tissue]ENSG00000198205-ZXDA [tissue]
Peptide AtlasP98168
HPRD02210
IPIIPI00024295   
Protein Interaction databases
DIP (DOE-UCLA)P98168
IntAct (EBI)P98168
FunCoupENSG00000198205
BioGRIDZXDA
STRING (EMBL)ZXDA
ZODIACZXDA
Ontologies - Pathways
QuickGOP98168
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  nucleic acid binding  DNA-binding transcription factor activity  protein binding  nucleus  regulation of transcription by RNA polymerase II  positive regulation of transcription, DNA-templated  metal ion binding  C2H2 zinc finger domain binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  nucleic acid binding  DNA-binding transcription factor activity  protein binding  nucleus  regulation of transcription by RNA polymerase II  positive regulation of transcription, DNA-templated  metal ion binding  C2H2 zinc finger domain binding  
NDEx NetworkZXDA
Atlas of Cancer Signalling NetworkZXDA
Wikipedia pathwaysZXDA
Orthology - Evolution
OrthoDB7789
GeneTree (enSembl)ENSG00000198205
Phylogenetic Trees/Animal Genes : TreeFamZXDA
HOGENOMP98168
Homologs : HomoloGeneZXDA
Homology/Alignments : Family Browser (UCSC)ZXDA
Gene fusions - Rearrangements
Fusion : QuiverZXDA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZXDA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZXDA
dbVarZXDA
ClinVarZXDA
1000_GenomesZXDA 
Exome Variant ServerZXDA
ExAC (Exome Aggregation Consortium)ENSG00000198205
GNOMAD BrowserENSG00000198205
Varsome BrowserZXDA
Genetic variants : HAPMAP7789
Genomic Variants (DGV)ZXDA [DGVbeta]
DECIPHERZXDA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZXDA 
Mutations
ICGC Data PortalZXDA 
TCGA Data PortalZXDA 
Broad Tumor PortalZXDA
OASIS PortalZXDA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZXDA  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZXDA
Mutations and Diseases : HGMDZXDA
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ZXDA
DgiDB (Drug Gene Interaction Database)ZXDA
DoCM (Curated mutations)ZXDA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZXDA (select a term)
intoGenZXDA
Cancer3DZXDA(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300235   
Orphanet
DisGeNETZXDA
MedgenZXDA
Genetic Testing Registry ZXDA
NextProtP98168 [Medical]
TSGene7789
GENETestsZXDA
Target ValidationZXDA
Huge Navigator ZXDA [HugePedia]
snp3D : Map Gene to Disease7789
BioCentury BCIQZXDA
ClinGenZXDA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7789
Chemical/Pharm GKB GenePA37763
Clinical trialZXDA
Miscellaneous
canSAR (ICR)ZXDA (select the gene name)
DataMed IndexZXDA
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZXDA
EVEXZXDA
GoPubMedZXDA
iHOPZXDA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:15:15 CEST 2019

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