GREB1 (growth regulation by estrogen in breast cancer 1)

2012-09-01   Kevin C Knower , Chantal B Magne Nde , Kyren Lazarus , Sarah Q To , Zhe Zhao , Ashwini L Chand , Colin D Clyne 

Cancer Drug Discovery Laboratory, Prince Henrys Institute, Clayton, Victoria, Australia

Identity

HGNC
LOCATION
2p25.1
LOCUSID
ALIAS
-
FUSION GENES

DNA/RNA

Atlas Image
Figure 1. (a) The genomic location of GREB1 on the short arm of chromosome 2. (b) The 3 primary splice variants of GREB1, GREB1a, GREB1b and GREB1c. Green boxes represent exons, red lines introns. Numbers below exons indicate exon number. Numbers either side of variant indicate genomic location of the start and end of each transcript.

Description

The GREB1 gene is located on the short arm of chromosome 2, at 2q25.1, between the genomic sites for E2F transcription factor 6 and neurotensin receptor 2 (Entrez gene 9687). It is encoded on the plus strand covering 108.68 kb from 11674242 to 11782912 (UCSC). The gene structure consists of 60 exons/alternative exons and 40 distinct introns.

Transcription

The GREB1 gene contains a distal enhancer 20 kb upstream of the transcription start site containing 3 estrogen response elements (EREs), which bind estrogen receptor α (ERα) in the presence of estrogen. In breast cancer cells, the steroid receptor co-activator SRC-3, phosphorylated RNA polymerase II and actylated histones are also bound in the presence of estrogen. Chromatin loops link the three distal EREs and the transcription start site, indicating the distal enhancer plays a potent role in GREB1 estrogen responsiveness (Deschênes et al., 2007; Sun et al., 2007).
Three primary representative complete cDNA clones have been isolated from an MCF7 (ER+ breast cancer cell line) cDNA library, designated GREB1a, GREB1b and GREB1c respectively (Ghosh et al., 2000). The longest transcript variant is GREB1a, consisting of 8482 bp spliced from 33 exons. GREB1b is 2521 bp in length and is spliced from 11 exons, whilst GREB1c is 2432 bp long spliced from 10 exons. All three variants differ in their 5 and 3 UTRs and contain distinct c-terminus regions. In addition, up to 10 additional splice variants have been identified amongst clones from breast, uterus, prostate and brain (Dias Neto et al., 2000; Nagase et al., 1998). Expression of GREB1 variants have also been detected in the ovary, prostate and pancreas (NCBI).

Proteins

Atlas Image
Table 1. Isoforms of GREB1. 1=present, 0=absent.

Description

GREB1 protein has 7 isoforms containing a transmembrane domain and/or N-myristoylation domain. The three well documented isoforms of GREB1 protein, GREB1a, GREB1b and GREB1c contain 1949, 457 and 409 amino acids, respectively (Table 1). They share N-terminus end region and containing diverging C-terminus end. The divergence between 1a and 1b start from 450 aa. GREB1c shares first 386 amino acids with GREB1a and differs from 387 to 409 amino acids (Ghosh et al., 2000).

Expression

GREB1 protein expression is found in both normal and cancerous tissues. Its regulation is not only correlated with the presence of a subset of nuclear receptors such as ERα (Deschênes et al., 2007; Hnatyszyn et al., 2010; Lin et al., 2004; Pellegrini et al., 2012), androgen receptor (AR) (Rae et al., 2006) and Liver receptor Homolog 1 (LRH-1) (Chand et al., 2012) but also depends on their activation. In breast cancers, GREB1 protein is detected in ERalpha+ but not ERalpha-negative breast tumour tissue (Hnatyszyn et al., 2010).
In addition GREB1, regulated by androgens is expressed in proliferating prostatic tissue and prostate cancer (Rae et al., 2006).

Localisation

GREB1 protein expression is predominantly nuclear with some cytoplasmic appearance (Hnatyszyn et al., 2010).

Function

The role of GREB1 is emerging as a hormone-dependent mediator of tumour cell proliferation. It has been reported to elicit estrogen and androgen-stimulated cell proliferation in breast and prostate tumours (Rae et al., 2006; Rae et al., 2005; Antunes et al., 2012). Whether the three variants have the same cellular function is unclear and its precise mechanistic action within the cell has still not been demonstrated.
The exact roles that GREB1 have in normal tissue are poorly defined.

Homology

GREB1 protein together with his paralogue GREB1-like located on chromosome 18 belong to the GREB1 family (Nagase et al., 2000). The GREB1 gene sequence is conserved in chimpanzee, dog, cow, mouse, chicken and monkey (HomoloGene).

Implicated in

Entity name
Breast cancers
Note
A family of estrogen responsive genes discovered in MCF7 cells were designated GREB (genes regulated by estrogen in breast cancer) (Ghosh et al., 2000). Of these novel genes, GREB-1 was identified to have a strong correlation with ERα in breast cancer cells (Ghosh et al., 2000; Rae et al., 2005). Interestingly, GREB-1 was significantly induced by E2 in MCF-7 cells and its suppression blocked E2 induced growth (Rae et al., 2005). Furthermore, the GREB-1 regulatory region was found to possess three crucial estrogen response elements (EREs) (Lin et al., 2004). In addition, ChIP analysis revealed the binding of ERα, the steroid receptor coactivator-3, acetylated histones and phosphorylated RNA polymerase II to all three EREs in the presence of E2 (Deschênes et al., 2007). Subsequently, GREB-1 is now a well characterised estrogen responsive gene used to identify ERα activity (Cai et al., 2011; Chand et al., 2012; Gupta et al., 2012; Liu et al., 2012; Rae et al., 2005; Sun et al., 2007; Woodfield et al., 2010). Hnatyszyn, et al developed a novel GREB-1 antibody which was used to detect GREB-1 protein expression in ERα+ve breast cancer cells and tissue (Hnatyszyn et al., 2010).
This positive correlation of GREB1 expression with ERα expression is validated in clinical cohorts (Ghosh et al., 2000). Another cohort of ER positive breast cancers in postmenopausal women (n=104) has shown a strong correlation of GREB-1 gene expression with plasma E2 levels (Dunbier et al., 2010). In a cohort of breast cancer patients (n=64) compared to healthy women (n=79) GREB-1 gene expression correlated positively with serum E2 levels (Haakensen et al., 2011). Furthermore in-vivo studies involving the transplantation of human breast tissue into female athymic mice (Balb/c nu/nu mice) has also demonstrated the induction of GREB-1 in response to E2 treatment (Wilson et al., 2006).
Entity name
Prostate cancer
Note
High levels of GREB1 mRNA ,comparable to levels in breast cancer MCF-7 cells, were found in prostatic tissues and prostate tumours (Rae et al., 2006). GREB1 was found to be also expressed in the AR-positive cell line LNCaP but absent in the AR-negative cell line PC-3 (Rae et al., 2006). GREB1 expression was responsive to androgens via androgen response elements (ARE) located ~3.3 kb upstream of the promoter. Knock-down of GREB1 in LNCaP cells led to the suppression of hormone-induced growth. Using microarray and qRT-PCR analysis of 33 prostate cancer patients, GREB1 was found to be over-expressed 13-fold compared to normal (Antunes et al., 2012). GREB1 transcript was significantly higher among patients with later stage prostate cancers.
Entity name
Lung cancer
Note
Following exposure to 2R4F tobacco mainstream smoke (MSS), GREB1 expression was elevated in normal human bronchial epithelial (NHBE) cells (Parsanejad et al., 2008). Using human saliva samples from 42 lung cancer patients and 74 healthy control subjects, transcriptomes were analyzed by gene microarray and revealed that GREB1 was one of five biomarkers found to be elevated in lung cancer patients (Zhang et al., 2012).
Entity name
Ovarian cancer
Note
To identify epigenetic changes associated with progression-free interval of ovarian cancer, 20 samples of advanced ovarian cancer with a predominantly serous papillary histological subtype were subjected to DNA methylation profiling. GREB1 promoter hypomethylation was associated with longer survival (Bauerschlag et al., 2011).
Entity name
Hypertension
Note
A SNP, 45718A>G, was significantly associated with hypertension and blood pressure level in men, and this SNP was in linkage disequilibrium with a SNP present at the 3 splice site of intron 11 (Kamide et al., 2005).

Bibliography

Pubmed IDLast YearTitleAuthors
199453092012GREB1 tissue expression is associated with organ-confined prostate cancer.Antunes AA et al
215770132011Progression-free survival in ovarian cancer is reflected in epigenetic DNA methylation profiles.Bauerschlag DO et al
219849052011The immunophilin-like protein XAP2 is a negative regulator of estrogen signaling through interaction with estrogen receptor α.Cai W et al
223596032012The orphan nuclear receptor LRH-1 and ERα activate GREB1 expression to induce breast cancer cell proliferation.Chand AL et al
174630002007Regulation of GREB1 transcription by estrogen receptor alpha through a multipartite enhancer spread over 20 kb of upstream flanking sequences.Deschênes J et al
107378002000Shotgun sequencing of the human transcriptome with ORF expressed sequence tags.Dias Neto E et al
201241842010Relationship between plasma estradiol levels and estrogen-responsive gene expression in estrogen receptor-positive breast cancer in postmenopausal women.Dunbier AK et al
111037992000PDZK1 and GREB1 are estrogen-regulated genes expressed in hormone-responsive breast cancer.Ghosh MG et al
219077922012Janus kinase 2--a novel negative regulator of estrogen receptor α function.Gupta N et al
218129552011Serum estradiol levels associated with specific gene expression patterns in normal breast tissue and in breast carcinomas.Haakensen VD et al
198420312010Correlation of GREB1 mRNA with protein expression in breast cancer: validation of a novel GREB1 monoclonal antibody.Hnatyszyn HJ et al
158342802005Hypertension susceptibility genes on chromosome 2p24-p25 in a general Japanese population.Kamide K et al
153450502004Discovery of estrogen receptor alpha target genes and response elements in breast tumor cells.Lin CY et al
221385802012TRIM29 functions as a tumor suppressor in nontumorigenic breast cells and invasive ER+ breast cancer.Liu J et al
96285811998Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro.Nagase T et al
112149702000Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro.Nagase T et al
188503772008The time course of expression of genes involved in specific pathways in normal human bronchial epithelial cells following exposure to cigarette smoke.Parsanejad R et al
228846592012The expression of estrogen receptors as well as GREB1, c-MYC, and cyclin D1, estrogen-regulated genes implicated in proliferation, is increased in peritoneal endometriosis.Pellegrini C et al
164964122006GREB1 is a novel androgen-regulated gene required for prostate cancer growth.Rae JM et al
176665872007Long-range activation of GREB1 by estrogen receptor via three distal consensus estrogen-responsive elements in breast cancer cells.Sun J et al
167285872006Effects of oestrogen on gene expression in epithelium and stroma of normal human breast tissue.Wilson CL et al
206290942010Identification of primary gene targets of TFAP2C in hormone responsive breast carcinoma cells.Woodfield GW et al
226890992012Development of transcriptomic biomarker signature in human saliva to detect lung cancer.Zhang L et al

Other Information

Locus ID:

NCBI: 9687
MIM: 611736
HGNC: 24885
Ensembl: ENSG00000196208

Variants:

dbSNP: 9687
ClinVar: 9687
TCGA: ENSG00000196208
COSMIC: GREB1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000196208ENST00000234142Q4ZG55
ENSG00000196208ENST00000263834Q4ZG55
ENSG00000196208ENST00000381483Q4ZG55
ENSG00000196208ENST00000381486Q4ZG55
ENSG00000196208ENST00000389825F8W6E5
ENSG00000196208ENST00000396123Q4ZG55
ENSG00000196208ENST00000432985C9JIG0
ENSG00000196208ENST00000628795A0A0D9SG99

Expression (GTEx)

0
50
100
150
200
250

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
234032922013Endogenous purification reveals GREB1 as a key estrogen receptor regulatory factor.138
150016662004Genome-wide identification of high-affinity estrogen response elements in human and mouse.123
159861232005GREB 1 is a critical regulator of hormone dependent breast cancer growth.105
192400612009Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling.75
174630002007Regulation of GREB1 transcription by estrogen receptor alpha through a multipartite enhancer spread over 20 kb of upstream flanking sequences.51
176665872007Long-range activation of GREB1 by estrogen receptor via three distal consensus estrogen-responsive elements in breast cancer cells.44
228846592012The expression of estrogen receptors as well as GREB1, c-MYC, and cyclin D1, estrogen-regulated genes implicated in proliferation, is increased in peritoneal endometriosis.38
164964122006GREB1 is a novel androgen-regulated gene required for prostate cancer growth.28
215770132011Progression-free survival in ovarian cancer is reflected in epigenetic DNA methylation profiles.25
24469735201417β-estradiol upregulates GREB1 and accelerates ovarian tumor progression in vivo.18

Citation

Kevin C Knower ; Chantal B Magne Nde ; Kyren Lazarus ; Sarah Q To ; Zhe Zhao ; Ashwini L Chand ; Colin D Clyne

GREB1 (growth regulation by estrogen in breast cancer 1)

Atlas Genet Cytogenet Oncol Haematol. 2012-09-01

Online version: http://atlasgeneticsoncology.org/gene/40751/greb1