IL1B (interleukin 1, beta)
2008-05-01 Sandra Giraldo  , Jesus Sanchez  , Quentin Felty  , Deodutta Roy   AffiliationDepartment of Environmental, Occupational Health, Robert Stempel School of Public Health, Florida International University, Miami, FL 33199, USA
Identity
HGNC
LOCATION
2q13
LOCUSID
ALIAS
IL-1,IL1-BETA,IL1F2,IL1beta
FUSION GENES
DNA/RNA
Note
IL-1beta is located on Chromosome 2 at location 113,303,808-113,310,827. It is located in the middle of IL-1a and IL1-RN between 40 and 110kb from IL-1a. The pro IL-1β gene is composed of seven exons with a primary transcription product length of 7,008 nucleotides.
Description
The gene spans a region of 7.5 kb and the coding part is divided into seven exons.
Transcription
Transcript length: 1,498 bps; Translation length: 269 residues.
Proteins
Description
269 amino acids.
Function
IL-1 proteins are considered endogenous pyrogens since they are involved in inflammatory responses and also have been observed to foment prostaglandin and collagenase release from synovial cells. Additionally, IL-1 is responsible for the induction of IL-2 release, B-cell maturation/proliferation, and fibroblast growth factor activity, that stimulates thymocyte proliferation.
Homology
IL-1beta shares sequence homology with IL-1a and IL1-RN. IL-1beta and IL-1a have an amino acid homology between them of approximately 25% .
Implicated in
Entity name
Gastric Cancer
Note
Interleukin-1 beta overexpression is associated with the increased risk of both hypochlorhydria induced by H. pylori and gastric cancer (El-Omar et al., 2000). Enhancement of IL-1beta production was determined to be caused by polymorphisms in the interleukin-1 gene cluster. The pro-inflammatory properties of the IL-1 beta cytokine could explain the association with gastric cancer, also considering it is an important inhibitor of acid secretion.
Entity name
Growth of estrogen-dependent tumors
Oncogenesis
In the pathogenesis of estrogen-dependent cancers, particularly, breast and ovary, the role of IL-1β is implicated in protumorigenic insults, cell proliferation, angiogenesis and cell adhesion. It appears that it is the concentration of the peptide interleukin-1 beta which determines its stimulatory or inhibitory paracrine and/or autocrine signals that regulate the growth of estrogen-dependent tumors. The IL-1β over expressing stable MCF7 cell secreting high level of IL-1β peptides shows inhibition of cell growth compared to nontransfected cells, and elevated level of p53 protein is detected in these cells (Roy et al., 2006). Stably IL-1beta transfected cells secreting moderate level of IL-1β peptides stimulate the clonal expansion of MCF7 cells. Different cellular signaling may operate in response to varying levels of IL-1β leading to genotoxic damage, cell apoptosis or cell growth .
Entity name
Tumorigenesis
Oncogenesis
Il-1 beta has also been found to stimulate the local production of chemotactic factors for polymorphonuclear leukocytes (PMNs) in tumors; PMNs may play an important role in the inhibition of tumor growth.
On the other hand, other studies have found IL-1 beta to promote tumor growth. According to Vidal-Vanaclocha et al. (2000), IL-1 beta along with tumor necrosis factor-alpha (TNF-alpha), up-regulate the expression of vascular cell adhesion molecule-1 ( VCAM-1 ) on hepatic sinusoidal endothelium (HSE) in vivo which promotes cancer cell adhesion and liver metastases.
On the other hand, other studies have found IL-1 beta to promote tumor growth. According to Vidal-Vanaclocha et al. (2000), IL-1 beta along with tumor necrosis factor-alpha (TNF-alpha), up-regulate the expression of vascular cell adhesion molecule-1 ( VCAM-1 ) on hepatic sinusoidal endothelium (HSE) in vivo which promotes cancer cell adhesion and liver metastases.
Entity name
Cardiovascular Risk, Cardiovascular Diseases
Note
Increased Cardiovascular Risk, Cardiovascular Diseases
Prognosis
SNPs in the interleukin-1beta gene has been reported to be associated with lower expression of basal CRP, a heritable acute-phase plasma protein, in healthy individuals. Elevated basal CRP has been associated with increased cardiovascular risk.
Additionally, an inflammatory cascade involving TNF, IL-1 beta and IL-6 has been suggested to play an important role in the pathogenesis of common postoperative problems associated with cardiac surgery involving a cardiopulmonary bypass. Increased levels of IL-6 release were associated with higher serum levels of TNF-a and IL-1β after surgery, in patients undergoing coronary artery bypass grafting (CABG) with cardiopulmonary bypass (CPB).
Additionally, an inflammatory cascade involving TNF, IL-1 beta and IL-6 has been suggested to play an important role in the pathogenesis of common postoperative problems associated with cardiac surgery involving a cardiopulmonary bypass. Increased levels of IL-6 release were associated with higher serum levels of TNF-a and IL-1β after surgery, in patients undergoing coronary artery bypass grafting (CABG) with cardiopulmonary bypass (CPB).
Entity name
Liver surgery
Note
Changes in tumor necrosis factor-a and interleukin-1 beta production following liver surgery.
Oncogenesis
For cirrhotic patients undergoing liver surgery, changes of IL-1B and tumor necrosis factor-a levels are observed, suggesting that these two genes play an important role in the pathogenesis of postoperative liver failures. Important tissue injury and/or endotoxin, organ failures could develop and progress after stimulation of cytokine production in monocytes by factors such as insufficient blood supply (ischemia).
Entity name
Inflammation
Prognosis
IL-1 beta gene might be an important neuroregulator of responses to inflammatory stressors in the central nervous system considering that overexpression of the IL-1 beta gene has been found in the CNS during systemic inflammation. IL-1a and IL-1b induction in the hypothalamus may regulate neuroendocrine functions during infection and inflammation. Wong et al (1997) propose that actions of brain IL-1 beta during systemic inflammation are an indicator of limited gene expression of cytokines in the brain to counteract IL-1 bioactivity.
Entity name
Rheumatoid Arthritis, Osteoarthritis
Prognosis
IL-1 Beta activity has been linked to a TNF-alpha/cAMP pathway involved in rheumatoid arthritis. Synergistic up-regulation in IL-1 beta synthesis by TNF-alpha/cAMP has been proposed to play a role in the permanent IL-1 beta levels continuously present in chronically inflamed joints. IL-1 beta production is regulated by the TNF-alpha/cAMP pathway at the transcription level requiring a cAMP response element located between -2762 and -2755 bp in the upstream regulatory sequence of IL-1 beta.
Entity name
Periodontal Disease
Prognosis
The severity of periodontal disease could be evaluated through IL-1 beta activity. Liu et al. (1996) identified IL-1beta as playing a pivotal role in the pathogenic mechanism of periodontal tissue destruction. According to the authors, clinical parameters such as gingival index (GI), probing depth (PD) and GCF flow were significantly correlated with gingival crevicular fluid (GCF) and tissue IL-1beta activity. Moreover, the degree of inflammation within periodontal disease tissue could be measured IL-1beta activity in GCF or diseased tissues based on the classification of clinical parameters.
An additional study corroborated above mentioned finding of IL-1 beta levels as a biomarker of periodontal disease. Elevated salivary levels of MMP-8 or IL-1beta or both combined, were found to significantly increase the risk of periodontal disease. Salivary levels of MMP-8 and IL-1beta could serve as biomarkers of periodontitis.
An additional study corroborated above mentioned finding of IL-1 beta levels as a biomarker of periodontal disease. Elevated salivary levels of MMP-8 or IL-1beta or both combined, were found to significantly increase the risk of periodontal disease. Salivary levels of MMP-8 and IL-1beta could serve as biomarkers of periodontitis.
Entity name
Erosive hand osteoarthritis (OA)
Note
There is a significant association between the genomic region containing the IL1B 5810 SNP and erosive hand OA in a group of US Caucasoid population (Stern et al., 2003). The IL1B 5810 AA genotype was significantly associated with the erosive hand OA subgroup (relative risk 3.8, p=0.007). The same genotype association was found significant between erosive and non-erosive hand OA subjects (relative risk 4.01, p=0.008). The IL1B 5810A allele occurs most frequently on haplotypes with the SNP alleles IL1B 1423C, IL1B 1903T, IL1B 5887C, and IL1A (-)889C.
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 3490654 | 1986 | Genomic sequence for human prointerleukin 1 beta: possible evolution from a reverse transcribed prointerleukin 1 alpha gene. | Clark BD et al |
| 10746728 | 2000 | Interleukin-1 polymorphisms associated with increased risk of gastric cancer. | El-Omar EM et al |
| 8777275 | 1996 | Relationships between clinical parameters, Interleukin 1B and histopathologic findings of gingival tissue in periodontitis patients. | Liu CM et al |
| 7608561 | 1995 | A cyclic adenosine 3',5'-monophosphate signal is required for the induction of IL-1 beta by TNF-alpha in human monocytes. | Lorenz JJ et al |
| 16570465 | 2006 | Salivary biomarkers of existing periodontal disease: a cross-sectional study. | Miller CS et al |
| 1966551 | 1990 | In vivo inhibition of tumor growth of B16 melanoma by recombinant interleukin 1 beta. II. Mechanism of inhibition: the role of polymorphonuclear leukocytes. | Neville ME et al |
| 8188271 | 1994 | A physical map of the region encompassing the human interleukin-1 alpha, interleukin-1 beta, and interleukin-1 receptor antagonist genes. | Nicklin MJ et al |
| 18373721 | 2008 | Quantification of the genetic component of basal C-reactive protein expression in SLE nuclear families. | Rhodes B et al |
| 11472429 | 2001 | Inter-individual differences in cytokine release in patients undergoing cardiac surgery with cardiopulmonary bypass. | Roth-Isigkeit A et al |
| 16146780 | 2006 | Levels of IL-1 beta control stimulatory/inhibitory growth of cancer cells. | Roy D et al |
| 8908543 | 1996 | Changes in tumor necrosis factor-a and interleukin-1 beta production following liver surgery on cirrhotic patients. | Sato T et al |
| 12801479 | 2003 | Association of erosive hand osteoarthritis with a single nucleotide polymorphism on the gene encoding interleukin-1 beta. | Stern AG et al |
| 10639148 | 2000 | IL-18 regulates IL-1beta-dependent hepatic melanoma metastasis via vascular cell adhesion molecule-1. | Vidal-Vanaclocha F et al |
| 8990190 | 1997 | Interleukin (IL) 1beta, IL-1 receptor antagonist, IL-10, and IL-13 gene expression in the central nervous system and anterior pituitary during systemic inflammation: pathophysiological implications. | Wong ML et al |
Other Information
Locus ID:
NCBI: 3553
MIM: 147720
HGNC: 5992
Ensembl: ENSG00000125538
Variants:
dbSNP: 3553
ClinVar: 3553
TCGA: ENSG00000125538
COSMIC: IL1B
RNA/Proteins
| Gene ID | Transcript ID | Uniprot |
|---|---|---|
| ENSG00000125538 | ENST00000263341 | P01584 |
| ENSG00000125538 | ENST00000416750 | C9JVK0 |
| ENSG00000125538 | ENST00000418817 | C9JWV2 |
| ENSG00000125538 | ENST00000432018 | C9JSC2 |
Expression (GTEx)
Pathways
PharmGKB
| Entity ID | Name | Type | Evidence | Association | PK | PD | PMIDs |
|---|---|---|---|---|---|---|---|
| PA10239 | clodronate | Chemical | ClinicalAnnotation | associated | PD | 16257277 | |
| PA164712563 | Bisphosphonates | Chemical | ClinicalAnnotation | associated | PD | 16257277 | |
| PA164713176 | Platinum compounds | Chemical | ClinicalAnnotation | associated | PD | 27498158 | |
| PA164713366 | Tumor necrosis factor alpha (TNF-alpha) inhibitors | Chemical | ClinicalAnnotation | associated | PD | 24776844, 28696418 | |
| PA166048654 | ustekinumab | Chemical | ClinicalAnnotation | associated | PD | 28696418 | |
| PA166048740 | Helicobacter Infections | Disease | ClinicalAnnotation | associated | PD | 14638340, 16815316, 21054464 | |
| PA443622 | Carcinoma, Non-Small-Cell Lung | Disease | ClinicalAnnotation | associated | PD | 27498158 | |
| PA443750 | Colitis, Ulcerative | Disease | ClinicalAnnotation | associated | PD | 24776844 | |
| PA443815 | Crohn Disease | Disease | ClinicalAnnotation | associated | PD | 22960943 | |
| PA445172 | Osteitis Deformans | Disease | ClinicalAnnotation | associated | PD | 16257277 | |
| PA445210 | Pain, Postoperative | Disease | ClinicalAnnotation | associated | PD | 27649267 | |
| PA445451 | Psoriasis | Disease | ClinicalAnnotation | associated | PD | 28696418 | |
| PA446116 | Inflammatory Bowel Diseases | Disease | ClinicalAnnotation | associated | PD | 24776844 | |
| PA447216 | Schizophrenia | Disease | ClinicalAnnotation | associated | PD | 25560300 | |
| PA448497 | aspirin | Chemical | ClinicalAnnotation | associated | PD | 19448967 | |
| PA449548 | etidronic acid | Chemical | ClinicalAnnotation | associated | PD | 16257277 | |
| PA450180 | lansoprazole | Chemical | ClinicalAnnotation | associated | PD | 14638340, 16815316, 21054464 | |
| PA450550 | morphine | Chemical | ClinicalAnnotation | associated | PD | 27649267 | |
| PA450704 | omeprazole | Chemical | ClinicalAnnotation | associated | PD | 14638340, 16815316, 21054464 | |
| PA451089 | pravastatin | Chemical | ClinicalAnnotation | associated | PD | 14515062 | |
| PA451216 | rabeprazole | Chemical | ClinicalAnnotation | associated | PD | 14638340, 16815316, 21054464 | |
| PA451255 | risedronate | Chemical | ClinicalAnnotation | associated | PD | 16257277 | |
| PA451688 | tiludronate | Chemical | ClinicalAnnotation | associated | PD | 16257277 | |
| PA452233 | antipsychotics | Chemical | ClinicalAnnotation | associated | PD | 25560300 | |
| PA452639 | infliximab | Chemical | ClinicalAnnotation | associated | PD | 22960943 |
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 37269122 | 2024 | Salivary Interleukin 1-Beta Concentration Associates With Sleep Quality in Older Individuals. | 0 |
| 37534578 | 2024 | Tmem178 Negatively Regulates IL-1β Production Through Inhibition of the NLRP3 Inflammasome. | 0 |
| 37821269 | 2024 | Human vascular smooth muscle cells utilise chymase for the atypical cleavage and activation of Interleukin-1β. | 1 |
| 37937732 | 2024 | Impact of interleukin-1β single nucleotide polymorphisms and depressive symptoms in individuals with chronic viral hepatitis. | 1 |
| 37952723 | 2024 | Genetic association of IL1B gene variants with primary glaucoma in a North Indian Punjabi cohort: An original study and meta-analysis. | 0 |
| 38000525 | 2024 | ZNF70 regulates IL-1β secretion of macrophages to promote the proliferation of HCT116 cells via activation of NLRP3 inflammasome and STAT3 pathway in colitis-associated colorectal cancer. | 1 |
| 38129541 | 2024 | A lncRNA-chromatin circuit regulates IL-1β-driven inflammation. | 0 |
| 38134572 | 2024 | Elucidating the mechanism of IL-1β-Mediated Piezo1 expression regulation of chondrocyte autophagy and apoptosis via the PI3K/AKT/mTOR signaling Pathway. | 1 |
| 38148427 | 2024 | Tau Accumulation in the Spinal Cord Contributes to Chronic Inflammatory Pain by Upregulation of IL-1β and BDNF. | 0 |
| 38236896 | 2024 | Salmonella manipulates the host to drive pathogenicity via induction of interleukin 1β. | 0 |
| 38246177 | 2024 | [miR-185-5p alleviates the inflammatory response of acute gouty arthritis by inhibiting of IL-1β]. | 0 |
| 38251918 | 2024 | Cutting Edge: Cytosolic Receptor AIM2 Is Induced by Peroxisome Proliferator-activated Receptor γ following Mycobacterium tuberculosis Infection of Human Macrophages but Does Not Contribute to IL-1β Release. | 1 |
| 38372637 | 2024 | Role for Caspase-8 in the Release of IL-1β and Active Caspase-1 from Viable Human Monocytes during Toxoplasma gondii Infection. | 0 |
| 38378749 | 2024 | A pivotal role for the IL-1β and the inflammasome in preterm labor. | 0 |
| 38380842 | 2024 | FGF23 facilitates IL-1β synthesis in rheumatoid arthritis through activating PI3K, Akt, and NF-κB pathways. | 0 |
Citation
Sandra Giraldo ; Jesus Sanchez ; Quentin Felty ; Deodutta Roy
IL1B (interleukin 1, beta)
Atlas Genet Cytogenet Oncol Haematol. 2008-05-01
Online version: http://atlasgeneticsoncology.org/gene/40950/il1b
