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LCP1 (lymphocyte cytosolic protein1)

Identity

Other namesL-Plastine
HGNC (Hugo) LCP1
Location 13q14
Location_base_pair Starts at 45598060 and ends at 45654460 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

Description spans on a 90 kb genomic fragment; 16 exons, large first intron (20kb)
Transcription 3.7 kb mRNA; coding sequence from exon 2 to exon 16: 3500 bp

Protein

Description 570 amino acids
Expression restricted to the hematopoietic cells (leukocytes); expression induced in all tumor cells of all tissues
Localisation membrane
Homology belongs to an actin-binding protein family (T-Plastin, Fimbrin, I-Plastin)

Implicated in

Entity t(3;13)(q27;q14)/ NHL --> LCP1 - BCL6
Disease non Hodgkin follicular as well as Burkitt lymphomas
Cytogenetics t(3;13) is observed as a secondary anomaly
Hybrid/Mutated Gene both 5' L-Plastin- 3' BCL6 and 5' BCL6 - 3' L-Plastin, leading to two fusion transcripts
Abnormal Protein no fusion protein, but promoter exchange between both partner genes
  

External links

Nomenclature
HGNC (Hugo)LCP1   6528
Entrez_Gene (NCBI)LCP1  3936  lymphocyte cytosolic protein 1 (L-plastin)
Cards
AtlasLCP1ID95
GeneCards (Weizmann)LCP1
Ensembl (Hinxton)ENSG00000136167 [Gene_View]  LCP1 [Vega]
AceView (NCBI)LCP1
Genatlas (Paris)LCP1
euGene (Indiana)3936
SOURCE (Stanford)NM_002298
Genomic and cartography
GoldenPath (UCSC)LCP1  -  13q14   chr13:45598060-45654460 -  13q14.3   [Description]    (hg18-Mar_2006)
EnsemblLCP1 - 13q14.3 [CytoView]
Mapping of homologs : NCBILCP1 [Mapview]
OMIM153430   
Gene and transcription
Gene : Genbank (Entrez)AB208984 AK058152 AK097275 AK129625 AK223305
Reference sequence (RefSeq transcript) :SRSNM_002298
Reference transcript : EntrezNM_002298
RefSeq genomic : SRSAC_000056 AC_000145 NC_000013 NT_024524 NW_001838074 NW_925473
RefSeq genomic : EntrezAC_000056 AC_000145 NC_000013 NT_024524 NW_001838074 NW_925473
Consensus coding sequences : CCDS NCBILCP1
Cluster EST : UnigeneHs.381099 [ SRS ] Hs.381099 [ NCBI ]
Alternative Splicing : Fast-db (Paris)4887
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP13796 (SRS) P13796 (Expasy) P13796 (Uniprot)
With graphics : InterProP13796
Splice isoforms : VarSplice FASTAP13796(VarSplice FASTA)
Domaine pattern : Prosite (SRS)ACTININ_1 (PS00019)    ACTININ_2 (PS00020)    CH (PS50021)    EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domain pattern : Prosite (Expaxy)ACTININ_1 (PS00019)    ACTININ_2 (PS00020)    CH (PS50021)    EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (SRS)Actinin_actin-bd_CS    Calponin-homology    Calponin_act_bd    EF-Hand_type    EF_hand_Ca_bd   
Domains : Interpro (EBI)Actinin_actin-bd_CS    Calponin-homology    Calponin_act_bd    EF-Hand_type    EF_hand_Ca_bd   
Related proteins : CluSTrP13796
Domain families : Pfam SRSCH (PF00307)    efhand (PF00036)   
Domain families : Pfam SangerCH (PF00307)    efhand (PF00036)   
Domain families : Pfam NCBIpfam00307    pfam00036   
Domain families : Smart EMBLCH (SM00033)EFh (SM00054)
Domain structure : Prodom (Prabi Lyon)EF-hand (PD000012)   
Blocks (Seattle)P13796
Crystal structure of protein : PDB SRS2D85   
Crystal structure of protein : PDBSum2D85   
Crystal structure of protein : IMB2D85   
Crystal structure of protein : PDB RSDB2D85   
HPRD01082
Protein Interaction databases
DIP (DOE-UCLA)P13796
IntAct (EBI)P13796
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBILCP1
SNP : GeneSNP UtahLCP1
SNP : HGBaseLCP1
Genetic variants : HAPMAPLCP1
Somatic Mutations in Cancer : COSMICLCP1 
Translocation Breakpoints in Cancer : TICdbLCP1 
Mutations and Diseases : HGMDLCP1
Hereditary diseases : OMIM153430   
Hereditary diseases : GENETests153430   
Diseases : Genetic AssociationLCP1
General knowledge
Homologs : HomoloGeneLCP1
Homology/Alignments : Family Browser UCSCLCP1
Phylogenetic Trees/Animal Genes : TreeFamLCP1
Chemical/Protein Interactions : CTD3936
Keywords Ontology : AmiGOruffle  phagocytic cup  calcium ion binding  cytoplasm  cytosol  actin filament  biological_process  identical protein binding  actin filament binding  actin filament bundle formation  
Keywords Ontology : EGO-EBIruffle  phagocytic cup  calcium ion binding  cytoplasm  cytosol  actin filament  biological_process  identical protein binding  actin filament binding  actin filament bundle formation  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesLCP1 Related clones (RZPD - Berlin)
Literature
PubMed35 Pubmed reference(s) in Entrez
PubGeneLCP1

Bibliography

Molecular cloning and characterization of plastin, a human leukocyte protein expressed in transformed human fibroblasts.
Lin CS, Aebersold RH, Kent SB, Varma M, Leavitt J
Molecular and cellular biology. 1988 ; 8 (11) : 4659-4668.
PMID 3211125
 
Human plastin genes. Comparative gene structure, chromosome location, and differential expression in normal and neoplastic cells.
Lin CS, Park T, Chen ZP, Leavitt J
The Journal of biological chemistry. 1993 ; 268 (4) : 2781-2792.
PMID 8428952
 
Activation of the leukocyte plastin gene occurs in most human cancer cells.
Park T, Chen ZP, Leavitt J
Cancer research. 1994 ; 54 (7) : 1775-1781.
PMID 8137292
 
Interaction of a Dictyostelium member of the plastin/fimbrin family with actin filaments and actin-myosin complexes.
Prassler J, Stocker S, Marriott G, Heidecker M, Kellermann J, Gerisch G
Molecular biology of the cell. 1997 ; 8 (1) : 83-95.
PMID 9017597
 
Cytogenetics in multiple myeloma: a multicenter study of 24 patients with t(11;14)(q13;q32) or its variant.
LaˆØ JL, Michaux L, Dastugue N, Vasseur F, Daudignon A, Facon T, Bauters F, Zandecki M
Cancer genetics and cytogenetics. 1998 ; 104 (2) : 133-138.
PMID 9666807
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written03-1998Sylvie Galiègue-Zouitina
U.124 INSERM, I.R.C.L., Place de Verdun, 59045 LILLE Cedex, France

Citation

This paper should be referenced as such :
Galiègue-Zouitina S . LCP1 (lymphocyte cytosolic protein1). Atlas Genet Cytogenet Oncol Haematol. March 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/LCP1ID95.html

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indexed on : Sat Jun 27 16:38:59 CEST 2009

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