MIR141 (microRNA 141)

2013-03-01   Luciana Batista , Fatima Mechta-Grigoriou 

Stress, Cancer Laboratory, Institut Curie, 26, rue dUlm, 75248 Paris Cedex 05, France, Inserm, U830, Paris, F-75248, France

Identity

HGNC
LOCATION
12p13.31
LOCUSID
ALIAS
MIRN141,mir-141

DNA/RNA

Note

miR-141 belongs to the miR-200 family of microRNAs (also referred to as miRNAs or miRs). This family is composed by five distinct miRNAs, classified into two subfamilies according to the sequence homology in their seed region (sequence of the miRNA defining its target specificity corresponding to nucleotides 2-7). The first subfamily includes the miR-141 and miR-200a and the second one is composed by the miR-200b, miR-200c and miR-429. These miRNAs are located within two clusters on different genomic loci: miR-200b, miR-200a and miR-429 are located on chromosome 1 in the human genome (chromosome 4 in mouse) and miR-141 and miR-200c on human chromosome 12 (chromosome 6 in mouse).
Atlas Image
A) Sequence of the five members of miR-200 family. The seed sequence is underlined and the two subfamilies are indicated by the blue/red bars. B) Schematic representation of the genomic localization of the two clusters containing the miR-200 family members. C) Schematic representation of the secondary structure of the pre-miR-141 hairpin. The sequence of the mature miR-141-3P is indicated in red and the miR-141-5P (previously called miR-141*) is in blue.

Description

Genomic location in human genome: chr 12: 7073260-7073354 (GRCh37/hg19 Assembly).
Orientation: + strand.
The mature sequence of MIR-141-3P (most abundant) is uaacacugucugguaaagaugg (accession MIMAT0000432).
The sequence of MIR-141-5P (previously called miR-141*) is caucuuccaguacaguguugga (accession MIMAT0004598).

Transcription

miRNA genes are generally transcribed by RNA polymerase II to generate capped and poly-adenylated primary transcripts, called pri-miRNAs. Pri-miRNAs are processed in the nucleus by the RNase III enzyme, Drosha, generating stem-loop structured RNAs called precursor miRNAs, or pre-miRNAs.
The pre-miR-141 sequence is CGGCCGGCCCUGGGUCCAUCUUCCAGUACAGUGUUGGAUGGUCUAAUUGUGAAGCUCCUAACACUGUCUGGUAAAGAUGGCUCCCGGGUGGGUUC (accession MI0000457) and a schematic representation of the secondary structure of the stem-loop is shown above. Pre-miRNAs are then exported to the cytoplasm. In the cytoplasm, another RNase III enzyme, Dicer, cleaves the pre-miRNAs, producing miRNAs duplexes of the mature miRNAs (5P and 3P) and then one of the strands is loaded into the miRNA-associated RNA-Induced Silencing Complex, RISC. The mature miRNAs are very stable RNA molecules.

Pseudogene

Not found (Pseudogene.org Build 68 via GeneCards).

Proteins

Note

Not applicable, miRNAs are not translated into proteins.

Implicated in

Entity name
Ovarian cancer
Note
The miR-200 family members are reproducibly found up-regulated in ovarian tumors compared to normal cells and tissues, in several independent studies (Bendoraite et al., 2010; Iorio et al., 2007; Nam et al., 2008; Wyman et al., 2009; Yang et al., 2008). The identification of differentially expressed miRNAs relies in part on the choice of normal cells used to compare with the tumors. This is an important aspect since which cells are at the origin of Epithelial Ovarian Cancers (EOC) is still under debate. It has been postulated that EOC arise from ovarian surface epithelium (OSE) cells. Other theories suggest that they originate from the fallopian tube or the Mullerian ducts (for review, Kurman and Shih, 2010). Among the previously cited studies, Iorio et al., 2007 and Nam et al., 2008 used normal ovary as control. The mesenchymal cell content in ovarian tissue compared to epithelial cancer cells could explain the observed enrichment of miR-200 members, which are highly expressed in epithelial cells. On the contrary, other studies compared ovarian tumors to normal human Ovarian Surface Epithelial (OSE) cells (Bendoraite et al., 2010; Wyman et al., 2009; Yang et al., 2008). All these five studies showed that miR-200 family miRNAs are highly expressed in EOC, suggesting that miR-200 over-expression is not only related to the epithelial versus mesenchymal content. Taken together, these data strongly suggest these miRNA could play a key role in ovarian tumorigenesis.
The prognostic value of miRNAs from the miR-200 family has been studied by several groups but the results are controversial. Two studies suggest that they can be associated with poor prognosis (Nam et al., 2008; Yang et al., 2008), while others indicate the opposite (Eitan et al., 2009; Hu et al., 2009; Leskelä et al., 2011; Marchini et al., 2011; Mateescu et al., 2011). Our unpublished analysis, based on a cohort of patients treated at the Institut Curie (Mateescu et al., 2011) and confirmed in other public available data (Cancer Genome Atlas Research Network, 2011) indicate that individual miRNA from the miR-200 family cannot robustly predict prognosis.
Nevertheless, these miRNAs could have an important role on clinics as a diagnostic tool. As discussed above, miR-200 family members accumulate significantly at early phases of ovarian tumorigenesis. Moreover, these miRNAs are detected in the blood of ovarian cancer patients, indicating they could be interesting early detection biomarkers of EOC (Kan et al., 2012; Taylor and Gercel-Taylor, 2008). Besides its potential application in diagnostics, the level of miR-141 and other miR-200s could also be useful for improvement in ovarian cancer patient care. The levels of these miRNAs in association with other genes could be used for patient stratification and therapy choices (for review, Batista et al., 2013).
Entity name
Prostate cancer
Note
In 2008, the proof of concept for the use of miRNAs in blood samples (serum/plasma), as biomarkers of human prostate cancers at early stages, has been established (Mitchell et al., 2008). Metastatic prostate patients were compared to healthy controls and miR-141 can distinguish with 100% specificity and 60% sensitivity patients with advanced prostate cancers from controls. In agreement with these results, another study showed that circulating miR-141 is a marker of high-risk prostate cancer (as well as miR-375) (Brase et al., 2011). These miRNAs are also up-regulated in tumor specimens and not only detected as circulating miRNAs. In another cohort of 21 prostate cancer patients, changes in miR-141 levels are correlated with variations of other biomarkers of prostate cancer disease, such as prostate specific antigen (PSA), circulating tumor cells (CTC) and lactate dehydrogenase (LDH) (Gonzales et al., 2011). Accordingly, in this study, miR-141 can predict tumor progression, similarly as previously validated clinical biomarkers.
Entity name
Colorectal cancer
Note
High miR-141 plasma level is associated with poor prognosis in colorectal cancer (CRC) and was proposed as a novel biomarker to find distant metastases, to be used together with the CEA (Carcinoembryonic Antigen) (Cheng et al., 2011). This was validated in two independent cohorts from different ethnic populations (US and China). Surprisingly, the elevated levels of miR-141 in plasma of stage IV CRC patients are not linked to elevated levels of miR-141 in tumor tissues at the primary sites. Some hypotheses to explain this result are that miR-141 could be elevated only in metastases and not in the primary tumor and that the circulating miR-141 could be a reflect of differential inflammatory response (Cheng et al., 2011). In another screening for new miRNAs that could be used as biomarkers for the detection of colorectal cancer, miR-141 was also detected up-regulated in the plasma of CRC patients (Wang et al., 2012b).
Entity name
Lung cancer
Note
In human lung cancer cell lines, miR-141 levels distinguished the cell lines on the basis of their site of origin, with higher miR-141 levels in cells from a primary lung tumor than in cell lines derived from metastatic sites (Gibbons et al., 2009). It has been suggested that the metastatic process relies on the down-regulation of miR-200s. This hypothesis is supported by in vivo data in lung cancer mouse models showing that over-expression of miR-200b inhibited metastases formation (Gibbons et al., 2009).
Entity name
Bladder cancer
Note
All members of miR-200 family, including miR-141, were up-regulated in a series of nine pairs of bladder urothelium carcinoma and matched normal urothelium analyzed by deep sequencing (Han et al., 2011). Another study revealed that miR-141 is up-regulated in bladder tumors compared to normal urothelium, but down-regulated in invasive compared to superficial tumors (Wiklund et al., 2011). Lower level of miR-141 was associated with increased DNA methylation and histone marks. In this cohort, loss of miR-200c (which is transcribed from the same genomic locus) was associated with poor outcome.
It has been described that miR-141 (among others) exhibit a lower expression in the urine of patients with bladder cancer compared to the control group (Wang et al., 2012a). Seventy-five samples were analyzed (24 controls) as well as nine patients before and after surgery. Interestingly, levels of miR-141, after surgery, increases back, up to the level of the control group. The confirmation of these results in larger cohorts using matched age and sex groups is needed. If confirmed, these results could indicate the potential role of miR-141 as a non-invasive biomarker for diagnostics and monitoring of bladder cancer.
Entity name
Kidney cancer
Note
Investigation of expression profiles of miRNAs in renal cell carcinoma indicated that miR-141 levels are down-regulated in the clear cell carcinoma (CCC) subtype (the most common subtype of renal cell carcinoma) compared to normal kidneys (Nakada et al., 2008). Although the number of samples analyzed was limited (16 CCC samples and 6 controls) the down-regulation of miR-141 was observed in all 16 cases of CCC and of high amplitude (100-fold in average). miR-141 levels were not systematically down-regulated in chromophobe subtype, another subtype of renal cell carcinoma (Nakada et al., 2008). The exact mechanism that explain this down-regulation was not investigated but could be explained by copy number alterations (losses) or the content of mesenchymal cells in the tumor samples compared to the normal kidneys.
Entity name
Gastric cancer
Note
Another cancer type where miR-141 was down-regulated is gastric cancer. Thirty-five primary gastric cancer tissues were compared with pair-matched adjacent non-tumor tissues and the miR-141 was found significant lower in 80% of them (Du et al., 2009).
Entity name
Thyroid cancer
Note
Anaplastic thyroid carcinoma (ATC) is a highly aggressive type of thyroid carcinoma. In contrast to well-differentiated thyroid carcinomas, such as papillary (PTC) and follicular (FTC), the prognosis for ATC is very poor. Microarray analyses of miRNA abundance in three primary ATCs versus three normal thyroid samples identified miR-141, as well as other miR-200s, as down-regulated in ATCs (Braun et al., 2010). Data in ATC cells indicate that miR-141 target TGFBR1 and SMAD2. Moreover, down-regulation of miR-141 distinguishes ATCs from other thyroid carcinomas, namely PTCs and FTCs.
Entity name
Esophageal cancer
Note
In order to explore the role of miRNAs on chemotherapy resistance, a study using nine human esophageal squamous cell carcinoma cell lines compared the miRNA profiles of cisplatin-resistant versus sensitive cell lines (Imanaka et al., 2011). miR-141 was the most up-regulated miRNA in the resistant cell lines. It has been suggested that miR-141 confers resistance to cisplatin-induced apoptosis by targeting YAP1 (yes-associated protein), which induces apoptosis upon treatment with DNA-damage agents.
Entity name
Cancers
Note
In summary, levels of miR-200 family members, including miR-141 were found misregulated in several different types of cancer. These miRNAs are potential biomarkers of various cancers and could be used in non-invasive diagnosis and monitoring of the disease. Accordingly, there are several patents published in the field.
Interestingly, miR-200 miRNAs were found up-regulated in ovarian cancer, superficial bladder tumors and in the blood of ovarian, colorectal and prostate patients, but down-regulated in kidney (CCC) and invasive gastric cancer as well as in the urine of bladder cancer patients.
The role of miR-200s in regulation of EMT process has been demonstrated, but some questions about its role in metastasis and tumor progression still need to be elucidated. Since high expression of miR-200s is associated with an epithelial phenotype, one can hypothesize that miR-200 expression varies in the different steps of tumorigenesis. One can speculate that miR-200 levels are high in primary tumors, become low during metastatic processes, when cells acquire mesenchymal characteristics, and could again be up-regulated in the metastases, if they exhibit a more epithelial phenotype. In agreement with this theory, in a study that compared 43 primary tumors (colon, bladder, breast and lung) to their matched lymph node metastases, miR-141, as well as other miR-200s, was found down-regulated in metastatic cancers (Baffa et al., 2009).
Besides their potential as diagnostic markers, miR-141 and other miR-200s levels could also be indicative of response to chemotherapy, at least in ovarian and oesophageal cancers, as discussed before.
Much remains to be done in the field to prove the role of miR-141 in human cancers and its interest in clinics. Nevertheless, given the several studies already published, the miR-200 family will inevitably be considered in future developments of medical tools based on miRNAs in the field of cancer diagnosis and/or therapy.
Entity name
Epithelial-mesenchymal transition (EMT)
Note
miR-200 family members, including miR-141 can regulate EMT by directly targeting ZEB1 and ZEB2 factors, which are repressors of E-cadherin (CDH1). Conversely, ZEB1/2 factors can negatively regulate the transcription of these miRNAs, establishing a negative feedback loop (Bendoraite et al., 2010; Bracken et al., 2008; Burk et al., 2008; Gregory et al., 2008; Korpal et al., 2008; Park et al., 2008).
Entity name
Stemness
Note
EMT being associated with stemness properties (Mani et al., 2008), miR-200 family has been involved in stemness by targeting ZEB1 (Wellner et al., 2009). Moreover, in both normal mammary stem cells and breast cancer stem cells, levels of miR-200 family miRNAs are reduced compared to non-tumorigenic cancer cells (Shimono et al., 2009). In addition to ZEB1 and ZEB2, miR-200 family members also target BMI1 and SUZ12, components of the PRC1 and PRC2 Polycomb complexes, respectively (Iliopoulos et al., 2010; Shimono et al., 2009), which are important for growth and function of cancer stem cells.
Entity name
Oxidative stress response
Note
miR-141 and other members of the miR-200 family are up-regulated following oxidative stress in different human and mouse cell lines (Magenta et al., 2011; Mateescu et al., 2011). Moreover, miR-141 and miR-200a directly target the p38 (MAPK14) transcript, which is an important redox sensor (Mateescu et al., 2011). NRF2 pathway is a key cellular defense pathway against oxidative stress. These miRNAs, miR-141/200a, also affect directly this pathway by targeting one of its key regulators, the NRF2 repressor, KEAP1 (Eades et al., 2011; van Jaarsveld et al., 2012).

Bibliography

Pubmed IDLast YearTitleAuthors
195937772009MicroRNA expression profiling of human metastatic cancers identifies cancer gene targets.Baffa R et al
235005252013Ovarian cancer emerging subtypes: role of oxidative stress and fibrosis in tumour development and response to treatment.Batista L et al
198544972010Regulation of miR-200 family microRNAs and ZEB transcription factors in ovarian cancer: evidence supporting a mesothelial-to-epithelial transition.Bendoraite A et al
188295402008A double-negative feedback loop between ZEB1-SIP1 and the microRNA-200 family regulates epithelial-mesenchymal transition.Bracken CP et al
204738692011Circulating miRNAs are correlated with tumor progression in prostate cancer.Brase JC et al
204986322010Downregulation of microRNAs directs the EMT and invasive potential of anaplastic thyroid carcinomas.Braun J et al
184834862008A reciprocal repression between ZEB1 and members of the miR-200 family promotes EMT and invasion in cancer cells.Burk U et al
217203652011Integrated genomic analyses of ovarian carcinoma.
214452322011Circulating plasma MiR-141 is a novel biomarker for metastatic colon cancer and predicts poor prognosis.Cheng H et al
193636432009Down-regulation of miR-141 in gastric cancer and its involvement in cell growth.Du Y et al
219261712011miR-200a regulates Nrf2 activation by targeting Keap1 mRNA in breast cancer cells.Eades G et al
194463162009Tumor microRNA expression patterns associated with resistance to platinum based chemotherapy and survival in ovarian cancer patients.Eitan R et al
197592622009Contextual extracellular cues promote tumor cell EMT and metastasis by regulating miR-200 family expression.Gibbons DL et al
217237972011Comparison of circulating MicroRNA 141 to circulating tumor cells, lactate dehydrogenase, and prostate-specific antigen for determining treatment response in patients with metastatic prostate cancer.Gonzales JC et al
183763962008The miR-200 family and miR-205 regulate epithelial to mesenchymal transition by targeting ZEB1 and SIP1.Gregory PA et al
214649412011MicroRNA expression signatures of bladder cancer revealed by deep sequencing.Han Y et al
195013892009A miR-200 microRNA cluster as prognostic marker in advanced ovarian cancer.Hu X et al
208327272010Loss of miR-200 inhibition of Suz12 leads to polycomb-mediated repression required for the formation and maintenance of cancer stem cells.Iliopoulos D et al
212896302011MicroRNA-141 confers resistance to cisplatin-induced apoptosis by targeting YAP1 in human esophageal squamous cell carcinoma.Imanaka Y et al
178757102007MicroRNA signatures in human ovarian cancer.Iorio MV et al
232726532012Elevated levels of circulating microRNA-200 family members correlate with serous epithelial ovarian cancer.Kan CW et al
184112772008The miR-200 family inhibits epithelial-mesenchymal transition and cancer cell migration by direct targeting of E-cadherin transcriptional repressors ZEB1 and ZEB2.Korpal M et al
201545872010The origin and pathogenesis of epithelial ovarian cancer: a proposed unifying theory.Kurman RJ et al
210515602011The miR-200 family controls beta-tubulin III expression and is associated with paclitaxel-based treatment response and progression-free survival in ovarian cancer patients.Leskelä S et al
215279372011miR-200c is upregulated by oxidative stress and induces endothelial cell apoptosis and senescence via ZEB1 inhibition.Magenta A et al
184858772008The epithelial-mesenchymal transition generates cells with properties of stem cells.Mani SA et al
213457252011Association between miR-200c and the survival of patients with stage I epithelial ovarian cancer: a retrospective study of two independent tumour tissue collections.Marchini S et al
221017652011miR-141 and miR-200a act on ovarian tumorigenesis by controlling oxidative stress response.Mateescu B et al
186632192008Circulating microRNAs as stable blood-based markers for cancer detection.Mitchell PS et al
189256462008Genome-wide microRNA expression profiling in renal cell carcinoma: significant down-regulation of miR-141 and miR-200c.Nakada C et al
184512332008MicroRNA expression profiles in serous ovarian carcinoma.Nam EJ et al
183818932008The miR-200 family determines the epithelial phenotype of cancer cells by targeting the E-cadherin repressors ZEB1 and ZEB2.Park SM et al
196659782009Downregulation of miRNA-200c links breast cancer stem cells with normal stem cells.Shimono Y et al
185892102008MicroRNA signatures of tumor-derived exosomes as diagnostic biomarkers of ovarian cancer.Taylor DD et al
223862402012Expression of microRNAs in the urine of patients with bladder cancer.Wang G et al
229702092012Plasma miR-601 and miR-760 are novel biomarkers for the early detection of colorectal cancer.Wang Q et al
199356492009The EMT-activator ZEB1 promotes tumorigenicity by repressing stemness-inhibiting microRNAs.Wellner U et al
204739482011Coordinated epigenetic repression of the miR-200 family and miR-205 in invasive bladder cancer.Wiklund ED et al
193905792009Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries.Wyman SK et al
181995362008MicroRNA expression profiling in human ovarian cancer: miR-214 induces cell survival and cisplatin resistance by targeting PTEN.Yang H et al
230452782013miR-141 regulates KEAP1 and modulates cisplatin sensitivity in ovarian cancer cells.van Jaarsveld MT et al

Other Information

Locus ID:

NCBI: 406933
MIM: 612093
HGNC: 31528
Ensembl: ENSG00000207708
miRBase:

Variants:

dbSNP: 406933
ClinVar: 406933
TCGA: ENSG00000207708
COSMIC: MIR141

RNA/Proteins

Pathways

PathwaySourceExternal ID
MicroRNAs in cancerKEGGhsa05206
MicroRNAs in cancerKEGGko05206

References

Pubmed IDYearTitleCitations
230452782013miR-141 regulates KEAP1 and modulates cisplatin sensitivity in ovarian cancer cells.78
205140232010miR-200bc/429 cluster targets PLCgamma1 and differentially regulates proliferation and EGF-driven invasion than miR-200a/141 in breast cancer.77
212389472011Enterovirus-induced miR-141 contributes to shutoff of host protein translation by targeting the translation initiation factor eIF4E.61
246475732014miR-141 is a key regulator of renal cell carcinoma proliferation and metastasis by controlling EphA2 expression.50
250048042014An ALS-associated mutation in the FUS 3'-UTR disrupts a microRNA-FUS regulatory circuitry.44
255214812015Combinations of serum prostate-specific antigen and plasma expression levels of let-7c, miR-30c, miR-141, and miR-375 as potential better diagnostic biomarkers for prostate cancer.41
224795522012MicroRNA-141 represses HBV replication by targeting PPARA.40
256332922015MicroRNA-141 inhibits tumor growth and metastasis in gastric cancer by directly targeting transcriptional co-activator with PDZ-binding motif, TAZ.37
258962532015MiR-141 Activates Nrf2-Dependent Antioxidant Pathway via Down-Regulating the Expression of Keap1 Conferring the Resistance of Hepatocellular Carcinoma Cells to 5-Fluorouracil.35
209677562011MicroRNA silencing of tumor suppressor DLC-1 promotes efficient hepatitis C virus replication in primary human hepatocytes.33

Citation

Luciana Batista ; Fatima Mechta-Grigoriou

MIR141 (microRNA 141)

Atlas Genet Cytogenet Oncol Haematol. 2013-03-01

Online version: http://atlasgeneticsoncology.org/gene/51100/mir141