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MSH3 mutS homolog 3 (E. coli)

Identity

Other namesDUP
hMSH3
MRP1
HGNC (Hugo) MSH3
Location 5q11-q12
Location_base_pair Starts at 79986050 and ends at 80208390 bp from pter ( according to hg18-Mar_2006)  [Mapping]
Local_order Between the DHFR and RASGRF2 genes.

DNA/RNA

Description The MSH3 gene is composed of 24 exons spanning in a region of 222 Kb.
Transcription There are two major transcripts of 5 kb and 3,8 kb under the control of two different polyadenilation sites.

Protein

Description Amino acids: 1137. Molecular Weight: 127 KDa. MSH3 is a protein involved in the mismatch repair process after DNA replication.
Expression Expression of MSH3 together with the dihydrofolate reductase (DHFR) gene appear to be regulated by a bidirectional promoter composed of multiple GC boxes and two initiator elements. MSH3 is expressed in all human tissues at low levels but with variable intensities, with higher expression in testis and pancreas and lower in small intestine and colon.
Function MSH3 binds to MSH2 to form the MutSb heterodimer, which binds to insertion-deletion mismatches of two or more base pairs. Thereafter the MutS complex associates with the MutL complex and recruits the proteins needed for DNA excision and repair.
Homology MSH3 is homologue to the bacterial MutS gene and to the Msh3 gene in S. cerevisiae. Homology is higher in the C-terminal region.

Mutations

Somatic MSH3 has insertions/deletions in a A(8) repeat in tumours showing microsatellite instability (MSI). As MSH3 is a mismatch repair gene and is mutated in a microsatellite only in MSI tumours is considered to be a secondary mutator that enhances a more severe MSI.

Implicated in

Entity MSI (MicroSatellite Instability).
Note Tumours in which the molecular feature that leads to cancer is the lost of the mismatch repair (MMR) system.
Disease This phenotype is present in 15% of colorectal cancer, gastric cancer and endometrial cancer, and with lower incidence in some other tissues.
Oncogenesis The average frequencies of the microsatellite mutation reported in sporadic MSI from colorectal, gastric and endometrial cancer are 38%, 39% and 25% respectively. In hereditary MSI (or HNPCC) is 51%.
  
Entity Hematological malignancies.
Oncogenesis It has been reported loss of expression of MSH3 at the mRNA level in some hematological malignancies including chronic myelogenous leukemia and acute myelogenous leukemia, acute lymphocytic leukemia and myelodysplastic syndrome.
  

External links

Nomenclature
HGNC (Hugo)MSH3   7326
Entrez_Gene (NCBI)MSH3  4437  mutS homolog 3 (E. coli)
Cards
AtlasMSH3ID341ch5q11
GeneCards (Weizmann)MSH3
Ensembl (Hinxton)ENSG00000113318 [Gene_View]  MSH3 [Vega]
AceView (NCBI)MSH3
Genatlas (Paris)MSH3
euGene (Indiana)4437
SOURCE (Stanford)NM_002439
Gene Expression (Array Express) ENSG00000113318
Genomic and cartography
GoldenPath (UCSC)MSH3  -     chr5:79986050-80208390 +  5q11-q12   [Description]    (hg18-Mar_2006)
EnsemblMSH3 - 5q11-q12 [CytoView]
Mapping of homologs : NCBIMSH3 [Mapview]
OMIM600887   
Gene and transcription
Gene : Genbank (Entrez)AA601983 AI817671 AK289856 BC004177 BC011817
Reference sequence (RefSeq transcript) :SRSNM_002439
Reference transcript : EntrezNM_002439
RefSeq genomic : SRSAC_000048 AC_000137 NC_000005 NT_006713 NW_001838951 NW_922729
RefSeq genomic : EntrezAC_000048 AC_000137 NC_000005 NT_006713 NW_001838951 NW_922729
Consensus coding sequences : CCDS NCBIMSH3
Cluster EST : UnigeneHs.648635 [ SRS ] Hs.648635 [ NCBI ]
Alternative Splicing : Fast-db (Paris)6754
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP20585 (SRS) P20585 (Expasy) P20585 (Uniprot)
With graphics : InterProP20585
Splice isoforms : VarSplice FASTAP20585(VarSplice FASTA)
Domaine pattern : Prosite (SRS)DNA_MISMATCH_REPAIR_2 (PS00486)   
Domain pattern : Prosite (Expaxy)DNA_MISMATCH_REPAIR_2 (PS00486)   
Domains : Interpro (SRS)DNA_mismatch_repair_MutS-lik_N    DNA_mismatch_repair_MutS_C    DNA_mismatch_repair_MutS_clamp    DNA_mismatch_repair_MutS_connt    DNA_mismatch_repair_MutS_core    DNA_mismatch_repair_MutS_N   
Domains : Interpro (EBI)DNA_mismatch_repair_MutS-lik_N    DNA_mismatch_repair_MutS_C    DNA_mismatch_repair_MutS_clamp    DNA_mismatch_repair_MutS_connt    DNA_mismatch_repair_MutS_core    DNA_mismatch_repair_MutS_N   
Related proteins : CluSTrP20585
Domain families : Pfam SRSMutS_I (PF01624)    MutS_II (PF05188)    MutS_III (PF05192)    MutS_IV (PF05190)    MutS_V (PF00488)   
Domain families : Pfam SangerMutS_I (PF01624)    MutS_II (PF05188)    MutS_III (PF05192)    MutS_IV (PF05190)    MutS_V (PF00488)   
Domain families : Pfam NCBIpfam01624    pfam05188    pfam05192    pfam05190    pfam00488   
Domain families : Smart EMBLMUTSac (SM00534)  MUTSd (SM00533)  
Blocks (Seattle)P20585
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD02931
Protein Interaction databases
DIP (DOE-UCLA)P20585
IntAct (EBI)P20585
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIMSH3
SNP : GeneSNP UtahMSH3
SNP : HGBaseMSH3
Genetic variants : HAPMAPMSH3
Somatic Mutations in Cancer : COSMICMSH3 
Mutations and Diseases : HGMDMSH3
Hereditary diseases : OMIM600887   
Hereditary diseases : GENETests600887   
Diseases : Genetic AssociationMSH3
General knowledge
Homologs : HomoloGeneMSH3
Homology/Alignments : Family Browser UCSCMSH3
Phylogenetic Trees/Animal Genes : TreeFamMSH3
Chemical/Protein Interactions : CTD4437
Keywords Ontology : AmiGOnucleotide binding  damaged DNA binding  single-stranded DNA binding  protein binding  ATP binding  mismatch repair  response to DNA damage stimulus  somatic recombination of immunoglobulin gene segments  centromeric DNA binding  mismatched DNA binding  guanine/thymine mispair binding  single guanine insertion binding  dinucleotide repeat insertion binding  MutSbeta complex  oxidized purine DNA binding  protein homodimerization activity  maintenance of DNA repeat elements  negative regulation of DNA recombination  positive regulation of helicase activity  
Keywords Ontology : EGO-EBInucleotide binding  damaged DNA binding  single-stranded DNA binding  protein binding  ATP binding  mismatch repair  response to DNA damage stimulus  somatic recombination of immunoglobulin gene segments  centromeric DNA binding  mismatched DNA binding  guanine/thymine mispair binding  single guanine insertion binding  dinucleotide repeat insertion binding  MutSbeta complex  oxidized purine DNA binding  protein homodimerization activity  maintenance of DNA repeat elements  negative regulation of DNA recombination  positive regulation of helicase activity  
Pathways : BIOCARTA
Pathways : KEGGColorectal cancer
Other databases
Probes
Probes : ImagenesMSH3 Related clones (RZPD - Berlin)
Literature
PubMed54 Pubmed reference(s) in Entrez
PubGeneMSH3

Bibliography

Isolation and characterization of cDNA clones derived from the divergently transcribed gene in the region upstream from the human dihydrofolate reductase gene.
Fujii H, Shimada T
The Journal of biological chemistry. 1989 ; 264 (17) : 10057-10064.
PMID 2722860
 
Loss of expression of the human MSH3 gene in hematological malignancies.
Inokuchi K, Ikejima M, Watanabe A, Nakajima E, Orimo H, Nomura T, Shimada T
Biochemical and biophysical research communications. 1995 ; 214 (1) : 171-179.
PMID 7669036
 
Mutation of MSH3 in endometrial cancer and evidence for its functional role in heteroduplex repair.
Risinger JI, Umar A, Boyd J, Berchuck A, Kunkel TA, Barrett JC
Nature genetics. 1996 ; 14 (1) : 102-105.
PMID 8782829
 
Genomic organization and expression of the human MSH3 gene.
Watanabe A, Ikejima M, Suzuki N, Shimada T
Genomics. 1996 ; 31 (3) : 311-318.
PMID 8838312
 
HNPCC-like cancer predisposition in mice through simultaneous loss of Msh3 and Msh6 mismatch-repair protein functions.
de Wind N, Dekker M, Claij N, Jansen L, van Klink Y, Radman M, Riggins G, van der Valk M, van't Wout K, te Riele H
Nature genetics. 1999 ; 23 (3) : 359-362.
PMID 10545954
 
Mutations at coding repeat sequences in mismatch repair-deficient human cancers: toward a new concept of target genes for instability.
Duval A, Hamelin R
Cancer research. 2002 ; 62 (9) : 2447-2454.
PMID 11980631
 
DNA mismatch repair defects: role in colorectal carcinogenesis.
Jacob S, Praz F
Biochimie. 2002 ; 84 (1) : 27-47.
PMID 11900875
 
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Contributor(s)

Written07-2006Enric Domingo, Simo Schwartz Jr

Citation

This paper should be referenced as such :
Domingo E, Schwartz S Jr . MSH3 mutS homolog 3 (E. coli). Atlas Genet Cytogenet Oncol Haematol. July 2006 .
URL : http://AtlasGeneticsOncology.org/Genes/MSH3ID341ch5q11.html

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indexed on : Sat Feb 27 10:52:29 CET 2010

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