NAT1 (N-acetyltransferase 1 (arylamine N-acetyltransferase))

2009-02-01   Jhon D Ruiz , José AG Agúndez , Carmen Martínez , Elena García-Martín 

Department of Pharmacology, Medical School, University of Extremadura, Badajoz, Spain (JDR, JAGA, CM); Department of Biochemistry & Molecular biology & Genetics, School of Biological Sciences, Badajoz, Spain (EGM)

Identity

HGNC
LOCATION
8p22
IMAGE
Atlas Image
LEGEND
Picture adapted from an original prepared by Genetics Home Reference; February 2009.
LOCUSID
ALIAS
AAC1,MNAT,NAT-1,NATI
FUSION GENES

DNA/RNA

Note

In humans NAT1 is located in the NAT cluster that comprises 230 kb and includes two functional genes, NAT1 and NAT2. In other species the number of NAT genes range from 0 to 4.
Atlas Image
Structure of the human NAT1 gene and common NAT1 transcripts.

Transcription

The human NAT1 gene has nine exons. The coding region is located in exon 9 and spans 870 bp. Diverse NAT1 transcripts have been reported and two promoters exist. The first promoter, designated as P1 is located in the 5 flanking region of exon 1 and controls two major (a1 and a2) transcripts. The second promoter is located upstream of exon 4 and give rise to at least five (b1 to b5) different transcripts. The different transcripts appear to have different translational efficiencies, although the biological significance of this is unknown (revised in Butcher et al., 2007).

Pseudogene

In humans the NAT locus has a pseudogene designated as NATP.

Proteins

Note

NAT enzymes have been identified in several vertebrate and microorganism species, whereas NAT deficiency in the domestic and wild dog is due to complete absence of NAT genes.

Description

The amino-terminal domain (residues 1-83) consists of five helices and one short beta-strand. The second domain comprises residues 85-192 and consists of nine beta-strands and two short helices. The third domain has a final helix which precedes the carboxy terminal region.

Expression

NAT1 activity is expressed in liver and in many extrahepatic tissues. The transcripts originated from the first promoter, NATa, are expressed in kidney, liver, lung and trachea. However the most common transcripts are those designated as type b in the Figure above and have been detected in all tissues examinated.

Localisation

Arylamine N-acetyltransferases are cytosolic enzymes.

Function

NAT1 is a phase II enzyme that participates in the metabolism of numerous primary arylamines and hydrazine drugs and carcinogens. In addition to their N-acetylation catalytic activity, NAT enzymes have also O-acetylation activity towards N-hydroxyarylamines.

Homology

NAT1 and NAT2 share 87% nucleotide homology in the coding region, whereas NAT1 and NAT2 proteins share 81% amino-acid sequence identity.

Mutations

Note

In humans NAT1 is highly polymorphic. Several polymorphisms, most of which are single nucleotide polymorphisms, and at least 26 different haplotypes have been described. The Figure below shows the positions of NAT1 polymorphisms, taking as a reference the start site in the open reading frame (ORF) in exon 9. Nonsynonymous polymorphisms are labeled in red font. The association of different haplotypes with phenotypes is summarized in the following link: http://louisville.edu/medschool/pharmacology/Human.NAT1.pdf.
Atlas Image

Implicated in

Entity name
Lung cancer
Note
Two independent studies have observed a significant association of the NAT1 polymorphism with lung cancer risk (Bouchardy et al., 1998; Wikman et al., 2001). However these studies should be interpreted cautiously because these do not agree on the NAT1 risk genotype. Another study identified an increased risk among carriers of NAT1 plus NAT2 slow genotypes (Gemignani et al., 2007). In a meta-analysis carried out with smokers that suffered from non small-cell lung cancer a relevant association of the NAT1 rapid acetylation genotype was identified (Zienolddiny et al., 2008). Although negative associations have been reported (Perera et al., 2006 ), NAT1 is emerging as the NAT gene most likely related to lung cancer (McKay et al, 2008).
Entity name
Head and neck cancer
Note
Since chemical compounds present in tobacco are inactivated by phase II enzymes, it has been proposed that head and neck cancer risk could be modified by NAT genotypes. Head and neck cancers are strongly associated with smoking, and a few studies have explored the role of NAT1 polymorphisms in the risk of developing head and neck cancer in smokers. However overall findings are inconsistent and associations if present are weak, and indicate either a decreased risk in carriers of the variant NAT1*10 (McKay et al., 2008), an increased risk (Katoh et al., 1998) or a lack of association (Fronhoffs et al., 2001; Henning et al., 1999; Agúndez, 2008).
Entity name
Breast cancer
Note
The NAT1*10 variant allele was associated to increased breast cancer risk among women who consumed well-done meat, although the statistical significance of this finding is low (Krajinovic et al., 2001). Several studies, however, indicate that no major association of NAT polymorphisms and breast cancer risk exists (Agúndez, 2008).
Entity name
Colorectal cancer
Note
A biologically plausible mechanistic hypothesis suggest that rapid NAT1 and/or NAT2 acetylators should more activate heterocyclic amine carcinogens within the colon to their ultimate carcinogenic forms, thereby predisposing them to colorectal cancer. However sufficient evidence is available to rule out a relevant association of NAT genotypes alone with colorectal cancer risk. This evidence is based in nearly thirty studies failed to detect a statistically significant association for NAT1 genotypes both with colorectal cancer or adenomas. In addition meta-analyses (Chen et al., 2005; Ye et al., 2002; Houlston et al., 2001) consistently confirm a lack of a relevant association of NAT1 rapid acetylator genotypes and colorectal cancer risk (revised in Agúndez, 2008).
Entity name
Bladder cancer
Note
No significant association of the NAT1 genotype with bladder cancer risk has been observed in a recent meta-analysis, although the authors found a joint effect of NAT1 rapid genotypes, slow NAT2 genotypes and smoking as factors increasing cancer risk (Sanderson et al., 2007). Overall findings are negative (Okkels et al., 1997), although a significant risk has been described in smokers (Taylor et al., 1998; Hsieh et al., 1999; Cascorbi et al., 2001) and a nearly significant association was observed in individuals exposed to benzidine (Carreon et al., 2006).

Bibliography

Pubmed IDLast YearTitleAuthors
186804722008Polymorphisms of human N-acetyltransferases and cancer risk.Agúndez JA et al
167883832006Functional properties of an alternative, tissue-specific promoter for human arylamine N-acetyltransferase 1.Barker DF et al
23400911990Human arylamine N-acetyltransferase genes: isolation, chromosomal localization, and functional expression.Blum M et al
97317151998N-acetyltransferase NAT1 and NAT2 genotypes and lung cancer risk.Bouchardy C et al
172106862007Induction of human arylamine N-acetyltransferase type I by androgens in human prostate cancer cells.Butcher NJ et al
160037472006NAT2 slow acetylation and bladder cancer in workers exposed to benzidine.Carreón T et al
114313402001Association of NAT1 and NAT2 polymorphisms to urinary bladder cancer: significantly reduced risk in subjects with NAT1*10.Cascorbi I et al
156377382005Relationship between metabolic enzyme polymorphism and colorectal cancer.Chen K et al
170856602006Classification of breast cancer using genetic algorithms and tissue microarrays.Dolled-Filhart M et al
115328622001Real-time PCR analysis of the N-acetyltransferase NAT1 allele *3, *4, *10, *11, *14 and *17 polymorphism in squamous cell cancer of head and neck.Fronhoffs S et al
172596542007Development of lung cancer before the age of 50: the role of xenobiotic metabolizing genes.Gemignani F et al
19960831991Monomorphic and polymorphic human arylamine N-acetyltransferases: a comparison of liver isozymes and expressed products of two cloned genes.Grant DM et al
157256092005Effects of N-acetyl transferase 1 and 2 polymorphisms on bladder cancer risk in Caucasians.Gu J et al
106674612000Molecular genetics and epidemiology of the NAT1 and NAT2 acetylation polymorphisms.Hein DW et al
123511462002Molecular genetics and function of NAT1 and NAT2: role in aromatic amine metabolism and carcinogenesis.Hein DW et al
102086491999Association of arylamine N-acetyltransferases NAT1 and NAT2 genotypes to laryngeal cancer risk.Henning S et al
114875382001Polymorphisms and colorectal tumor risk.Houlston RS et al
105077821999Genetic polymorphisms of N-acetyltransferase 1 and 2 and risk of cigarette smoking-related bladder cancer.Hsieh FI et al
95111821998Identification and characterization of variant alleles of human acetyltransferase NAT1 with defective function using p-aminosalicylate as an in-vivo and in-vitro probe.Hughes NC et al
152266722004Identification of the major promoter and non-coding exons of the human arylamine N-acetyltransferase 1 gene (NAT1).Husain A et al
175916752007Functional analysis of the human N-acetyltransferase 1 major promoter: quantitation of tissue expression and identification of critical sequence elements.Husain A et al
1046079019991998 International Meeting on the Arylamine N-Acetyltransferases: synopsis of the workshop on nomenclature, biochemistry, molecular biology, interspecies comparisons, and role in human disease risk.Ilett KF et al
166804332006Loss of function polymorphisms in NAT1 protect against spina bifida.Jensen LE et al
107802741999Role of arylamine N-acetyltransferase 1 and 2 (NAT1 and NAT2) genotypes in susceptibility to oral/pharyngeal and laryngeal cancers.Jourenkova-Mironova N et al
96308271998Quantitation of three-month intraindividual variability and influence of sex and menstrual cycle phase on CYP1A2, N-acetyltransferase-2, and xanthine oxidase activity determined with caffeine phenotyping.Kashuba AD et al
98061621998A pilot study testing the association between N-acetyltransferases 1 and 2 and risk of oral squamous cell carcinoma in Japanese people.Katoh T et al
112910492001Genetic susceptibility to breast cancer in French-Canadians: role of carcinogen-metabolizing enzymes and gene-environment interactions.Krajinovic M et al
96822721998Variants of N-acetyltransferase NAT1 and a case-control study of colorectal adenomas.Lin HJ et al
168572112006Arylamine N-acetyltransferase aggregation and constitutive ubiquitylation.Liu F et al
181997192008Sequence variants of NAT1 and NAT2 and other xenometabolic genes and risk of lung and aerodigestive tract cancers in Central Europe.McKay JD et al
173920172007Arylamine N-acetyltransferase I.Minchin RF et al
77179631995Acetylation of p-aminobenzoylglutamate, a folic acid catabolite, by recombinant human arylamine N-acetyltransferase and U937 cells.Minchin RF et al
91074261997Arylamine N-acetyltransferase 1 (NAT1) and 2 (NAT2) polymorphisms in susceptibility to bladder cancer: the influence of smoking.Okkels H et al
168353482006Lack of associations among cancer and albumin adducts, ras p21 oncoprotein levels, and CYP1A1, CYP2D6, NAT1, and NAT2 in a nested case-control study of lung cancer within the physicians' health study.Perera FP et al
168097282006Novel prognostic immunohistochemical biomarker panel for estrogen receptor-positive breast cancer.Ring BZ et al
113687582001Homology modelling and structural analysis of human arylamine N-acetyltransferase NAT1: evidence for the conservation of a cysteine protease catalytic domain and an active-site loop.Rodrigues-Lima F et al
176756542007Joint effects of the N-acetyltransferase 1 and 2 (NAT1 and NAT2) genes and smoking on bladder carcinogenesis: a literature-based systematic HuGE review and evidence synthesis.Sanderson S et al
97218681998The role of N-acetylation polymorphisms in smoking-associated bladder cancer: evidence of a gene-gene-exposure three-way interaction.Taylor JA et al
92963521997Cytosolic arylamine N-acetyltransferase (NAT) deficiency in the dog and other canids due to an absence of NAT genes.Trepanier LA et al
112395772001Arylamine N-acetyltransferases - of mice, men and microorganisms.Upton A et al
75987381995Purification of recombinant human N-acetyltransferase type 1 (NAT1) expressed in E. coli and characterization of its potential role in folate metabolism.Ward A et al
112660802001Relevance of N-acetyltransferase 1 and 2 (NAT1, NAT2) genetic polymorphisms in non-small cell lung cancer susceptibility.Wikman H et al
176563652007Structural basis of substrate-binding specificity of human arylamine N-acetyltransferases.Wu H et al
121657422002Meta-analysis of 20 case-control studies on the N-acetyltransferase 2 acetylation status and colorectal cancer risk.Ye Z et al
182586092008A comprehensive analysis of phase I and phase II metabolism gene polymorphisms and risk of non-small cell lung cancer in smokers.Zienolddiny S et al

Other Information

Locus ID:

NCBI: 9
MIM: 108345
HGNC: 7645
Ensembl: ENSG00000171428

Variants:

dbSNP: 9
ClinVar: 9
TCGA: ENSG00000171428
COSMIC: NAT1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000171428ENST00000307719P18440
ENSG00000171428ENST00000517492P18440
ENSG00000171428ENST00000518029P18440
ENSG00000171428ENST00000520546P18440
ENSG00000171428ENST00000541942P18440
ENSG00000171428ENST00000545197F5H5R8

Expression (GTEx)

0
1
2
3
4
5
6
7
8

Pathways

PathwaySourceExternal ID
Caffeine metabolismKEGGko00232
Drug metabolism - other enzymesKEGGko00983
Caffeine metabolismKEGGhsa00232
Drug metabolism - other enzymesKEGGhsa00983
Metabolic pathwaysKEGGhsa01100
Chemical carcinogenesisKEGGhsa05204
Chemical carcinogenesisKEGGko05204
MetabolismREACTOMER-HSA-1430728
Biological oxidationsREACTOMER-HSA-211859
Phase II conjugationREACTOMER-HSA-156580
AcetylationREACTOMER-HSA-156582

Protein levels (Protein atlas)

Not detected
Low
Medium
High

PharmGKB

Entity IDNameTypeEvidenceAssociationPKPDPMIDs
PA166114414cotinineChemicalClinicalAnnotationassociatedPK
PA443750Colitis, UlcerativeDiseaseVariantAnnotationassociatedPK
PA443815Crohn DiseaseDiseaseVariantAnnotationassociatedPK
PA446116Inflammatory Bowel DiseasesDiseaseVariantAnnotationassociatedPK
PA450384mesalazineChemicalVariantAnnotationassociatedPK
PA451663thioguanineChemicalVariantAnnotationassociatedPK

References

Pubmed IDYearTitleCitations
194202222009Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans.185
161123012005NAT2 slow acetylation, GSTM1 null genotype, and risk of bladder cancer: results from the Spanish Bladder Cancer Study and meta-analyses.174
199131212009Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.85
157461602005Constitutional short telomeres are strong genetic susceptibility markers for bladder cancer.83
146083572003A putative RUNX1 binding site variant between SLC9A3R1 and NAT9 is associated with susceptibility to psoriasis.71
117514432001Combined effects of well-done red meat, smoking, and rapid N-acetyltransferase 2 and CYP1A2 phenotypes in increasing colorectal cancer risk.55
160069972005A comprehensive analysis of phase I and phase II metabolism gene polymorphisms and risk of colorectal cancer.52
164345942006Effect of NAT1 and NAT2 genetic polymorphisms on colorectal cancer risk associated with exposure to tobacco smoke and meat consumption.51
164345942006Effect of NAT1 and NAT2 genetic polymorphisms on colorectal cancer risk associated with exposure to tobacco smoke and meat consumption.51
189907502008Red meat intake, doneness, polymorphisms in genes that encode carcinogen-metabolizing enzymes, and colorectal cancer risk.44

Citation

Jhon D Ruiz ; José AG Agúndez ; Carmen Martínez ; Elena García-Martín

NAT1 (N-acetyltransferase 1 (arylamine N-acetyltransferase))

Atlas Genet Cytogenet Oncol Haematol. 2009-02-01

Online version: http://atlasgeneticsoncology.org/gene/41497/nat1