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ZBTB16 (zinc finger and BTB domain containing 16)

Identity

Other namesPLZF (promyelocytic leukemia zinc finger)
ZNF145 (zinc finger protein 145)
HGNC (Hugo) ZBTB16
Location 11q23.1
Location_base_pair Starts at 113930446 and ends at 114060486 bp from pter ( according to hg19-Feb_2009)  [Mapping]
Local_order centromeric to MLL

DNA/RNA

 
  c-PLZF at 11q23.1 in normal cells: PAC 980J15 - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are wellcome: contact M Rocchi
Transcription 2.2 kb mRNA; alternative splicing: --> PLZFa and PLZFb

Protein

Description 540 and 673 amino acids, 62 and 74 kDa (PLZFa and b respectively); Kr¸ppel-like zinc finger protein; N-term BTB/POZ domain (protein-protein interaction motif) and 9 zinc finger domains in C-term
Expression highly specific for hematopoietic cells; during mouse development, PLZF is expressed in embryonic tissus, giving rise to hematopoietic progenitors; in man, PLZF is expressed in CD34+ progenitor cells and in primitive multipotent hematopoietic cell lines; PLZF levels decrease progressively with cell maturation and also with maturation induced by ATRA treatment.
Localisation nuclear; immunodetection shows a nuclear speckeled distribution of PLZF, resulting from a localization on discrete nuclear bodies whose formation is dependent on the integrity of the BTB/POZ domain.
Function putative transcription factor associated with myeloid differentiation; sequence specific DNA binding activity; in co-transfection experiments, PLZF has been shown to represses the transcription.
Homology with the zinc finger MZF-1

Implicated in

Entity t(11;17)(q23;q21) in M3 ANLL --> PLZF - RARA
Disease acute promyelocytic leukaemia with a 'variant' translocation
Prognosis worse prognosis than M3 ANLL with t(15;17), because the patients fail to respond to the maturation effect of ATRA
Cytogenetics t(11;17), like t(15;17)(q22;q21), and like another t(11;17)(q13;q21), with a discrete breakpoint in 11q13 are, closely related to t(15;17)(q22;q21)
Hybrid/Mutated Gene both fusion transcripts are expressed
Abnormal Protein the two fusion proteins are produced; the PLZF/RARa protein contains the N-terminal BTB/POZ domain and two out of the nine zinc finger domains from PLZF; tThe POZ domain is largely responsible for the activity of PLZF/RARa fusion protein.
  

External links

Nomenclature
HGNC (Hugo)ZBTB16   12930
Entrez_Gene (NCBI)ZBTB16  7704  zinc finger and BTB domain containing 16
Cards
AtlasPLZF37
GeneCards (Weizmann)ZBTB16
Ensembl (Hinxton)ENSG00000109906 [Gene_View]  ZBTB16 [Vega]
AceView (NCBI)ZBTB16
Genatlas (Paris)ZBTB16
euGene (Indiana)7704
SOURCE (Stanford)NM_001018011 NM_006006
Gene Expression (Array Express) ENSG00000109906
Genomic and cartography
GoldenPath (UCSC)ZBTB16  -  11q23.1   chr11:113930446-114060486 +  11q23.1   [Description]    (hg19-Feb_2009)
EnsemblZBTB16 - 11q23.1 [CytoView]
Mapping of homologs : NCBIZBTB16 [Mapview]
OMIM176797   612447   
Gene and transcription
Gene : Genbank (Entrez)AB208916 AK126422 BC026902 BC029812 BM969145
Reference sequence (RefSeq transcript) :SRSNM_001018011 NM_006006
Reference transcript : EntrezNM_001018011 NM_006006
RefSeq genomic : SRSAC_000054 AC_000143 NC_000011 NG_012140 NT_033899 NW_001838042 NW_925173
RefSeq genomic : EntrezAC_000054 AC_000143 NC_000011 NG_012140 NT_033899 NW_001838042 NW_925173
Consensus coding sequences : CCDS NCBIZBTB16
Cluster EST : UnigeneHs.682144 [ SRS ] Hs.682144 [ NCBI ]
Alternative Splicing : Fast-db (Paris)13982
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ05516 (SRS) Q05516 (Expasy) Q05516 (Uniprot)
With graphics : InterProQ05516
Splice isoforms : VarSplice FASTAQ05516(VarSplice FASTA)
Domaine pattern : Prosite (SRS)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domain pattern : Prosite (Expaxy)BTB (PS50097)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ05516
Domain families : Pfam SRSBTB (PF00651)    zf-C2H2 (PF00096)   
Domain families : Pfam SangerBTB (PF00651)    zf-C2H2 (PF00096)   
Domain families : Pfam NCBIpfam00651    pfam00096   
Domain families : Smart EMBLBTB (SM00225)  ZnF_C2H2 (SM00355)  
Blocks (Seattle)Q05516
Crystal structure of protein : PDB SRS1BUO    1CS3   
Crystal structure of protein : PDBSum1BUO    1CS3   
Crystal structure of protein : IMB1BUO    1CS3   
Crystal structure of protein : PDB RSDB1BUO    1CS3   
Human Protein AtlasENSG00000109906
HPRD11762
Protein Interaction databases
DIP (DOE-UCLA)Q05516
IntAct (EBI)Q05516
FunCoupENSG00000109906
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIZBTB16
SNP : GeneSNP UtahZBTB16
SNP : HGBaseZBTB16
Genetic variants : HAPMAPZBTB16
Somatic Mutations in Cancer : COSMICZBTB16 
Translocation Breakpoints in Cancer : TICdbZBTB16 
Mutations and Diseases : HGMDZBTB16
Hereditary diseases : OMIM176797    612447   
Hereditary diseases : GENETests176797    612447   
Diseases : Genetic AssociationZBTB16
General knowledge
Homologs : HomoloGeneZBTB16
Homology/Alignments : Family Browser UCSCZBTB16
Phylogenetic Trees/Animal Genes : TreeFamZBTB16
Chemical/Protein Interactions : CTD7704
Keywords Ontology : AmiGOskeletal system development  mesonephros development  DNA binding  DNA binding  double-stranded DNA binding  transcription factor activity  protein binding  intracellular  nucleus  cytosol  plasma membrane  apoptosis  central nervous system development  protein C-terminus binding  zinc ion binding  negative regulation of cell proliferation  embryonic pattern specification  anterior/posterior pattern formation  transcription repressor activity  specific transcriptional repressor activity  PML body  nuclear speck  transcriptional repressor complex  protein domain specific binding  hemopoiesis  hemopoiesis  myeloid cell differentiation  protein localization in nucleus  leg morphogenesis  embryonic hindlimb morphogenesis  forelimb morphogenesis  embryonic digit morphogenesis  identical protein binding  protein homodimerization activity  positive regulation of apoptosis  regulation of transcription  negative regulation of myeloid cell differentiation  negative regulation of transcription, DNA-dependent  metal ion binding  male germ-line stem cell division  
Keywords Ontology : EGO-EBIskeletal system development  mesonephros development  DNA binding  DNA binding  double-stranded DNA binding  transcription factor activity  protein binding  intracellular  nucleus  cytosol  plasma membrane  apoptosis  central nervous system development  protein C-terminus binding  zinc ion binding  negative regulation of cell proliferation  embryonic pattern specification  anterior/posterior pattern formation  transcription repressor activity  specific transcriptional repressor activity  PML body  nuclear speck  transcriptional repressor complex  protein domain specific binding  hemopoiesis  hemopoiesis  myeloid cell differentiation  protein localization in nucleus  leg morphogenesis  embryonic hindlimb morphogenesis  forelimb morphogenesis  embryonic digit morphogenesis  identical protein binding  protein homodimerization activity  positive regulation of apoptosis  regulation of transcription  negative regulation of myeloid cell differentiation  negative regulation of transcription, DNA-dependent  metal ion binding  male germ-line stem cell division  
Pathways : BIOCARTAMap Kinase Inactivation of SMRT Corepressor [Genes]   
Pathways : KEGG
Other databases
Probes
ProbePLZF at 11q23.1 in normal cells (Bari)
Probes : ImagenesZBTB16 Related clones (RZPD - Berlin)
Literature
PubMed88 Pubmed reference(s) in Entrez
PubGeneZBTB16

Bibliography

Rearrangements of the retinoic acid receptor alpha and promyelocytic leukemia zinc finger genes resulting from t(11;17)(q23;q21) in a patient with acute promyelocytic leukemia.
Chen SJ, Zelent A, Tong JH, Yu HQ, Wang ZY, Derrˆ© J, Berger R, Waxman S, Chen Z
The Journal of clinical investigation. 1993 ; 91 (5) : 2260-2267.
PMID 8387545
 
Reduced and altered DNA-binding and transcriptional properties of the PLZF-retinoic acid receptor-alpha chimera generated in t(11;17)-associated acute promyelocytic leukemia.
Licht JD, Shaknovich R, English MA, Melnick A, Li JY, Reddy JC, Dong S, Chen SJ, Zelent A, Waxman S
Oncogene. 1996 ; 12 (2) : 323-336.
PMID 8570209
 
PML, PLZF and NPM genes in the molecular pathogenesis of acute promyelocytic leukemia.
Pandolfi PP
Haematologica. 1996 ; 81 (5) : 472-482.
PMID 8952164
 
Leukemia-associated retinoic acid receptor alpha fusion partners, PML and PLZF, heterodimerize and colocalize to nuclear bodies.
Koken MH, Reid A, Quignon F, Chelbi-Alix MK, Davies JM, Kabarowski JH, Zhu J, Dong S, Chen S, Chen Z, Tan CC, Licht J, Waxman S, de Thˆ© H, Zelent A
Proceedings of the National Academy of Sciences of the United States of America. 1997 ; 94 (19) : 10255-10260.
PMID 9294197
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written04-1998Franck Viguié

Citation

This paper should be referenced as such :
Viguié F . ZBTB16 (zinc finger and BTB domain containing 16). Atlas Genet Cytogenet Oncol Haematol. April 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/PLZF37.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 31 20:03:59 CEST 2010

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