RPRML (Reprimo-like)

2021-02-01   María Alejandra Alarcón , Alejandro H. Corvalán 

Advanced Center for Chronic Diseases (MAA); Laboratorio de Oncologèa y Hematologèa, Facultad de Medicina, Pontificia Universidad Católica de Chile; mralarco@uc.cl , acorvalan@uc.cl (MAA, AHC)

Identity

HGNC
LOCATION
17q21.32
LOCUSID
ALIAS
-

Abstract

Review on RPRML, with data on DNA, on the protein encoded, and where the gene is implicated.

DNA/RNA

Atlas Image
Figure 1. RPRML location (hg38)

Description

RPRML is a single-exon and intronless gene located on the reverse strand of chromosome 17 between nucleotides 46,978,156 and 46,979,253 (GRCh38.p13 assembly). The gene spans 1.098 kb of genomic DNA within a dense CpG island.

Transcription

The mRNA is 1.098 kb in length. Transcription is regulated by DNA methylation (Alarcon et al., 2020). According to the Genotype-Tissue Expression (GTEx) database (www.gtexportal.org), RPRML is expressed at very low levels in most tissues and mainly expressed in brain compartments.

Proteins

Note

RPRML is yet poorly known.

Description

RPRML open reading frame encodes a 120-amino acid protein with an estimated molecular mass of 12.3 kDa. Predicted post-translational modifications include two N-glycosylation sites at amino acids 2 and 27, a sumoylation site at position 93, and two serine- phosphorylation sites at positions 9 and 108 (Amigo et al., 2018).

Expression

RPRML protein expression has been reported in glandular and foveolar epithelial cells of the gastric mucosa (Alarcón et al., 2020).

Localisation

Bioinformatic predictions indicates it contains a single-pass transmembrane domain located between amino acids 67 and 87 (Amigo et al., 2018). However, immunohistochemical evidence and ectopic overexpression experiments indicate it is predominantly localized in the cytoplasm (Alarcón et al. 2020).

Function

RPRML is expressed during normal embryonic development of zebrafish and is required for the formation of hematopoietic progenitors during hematovascular development (Figueroa et al,. 2017 and Stanic et al., 2019). In humans, it has tumor suppressor properties and when ectopically overexpressed in the AGS gastric cancer cell line it inhibits cell cycle progression at G2/M phase, reduces cell proliferation, clonogenic capacity and anchorage-independent growth (Alarcón et al. 2020). In gastric tumors, the loss of RPRML protein expression is associated with reduced apoptotic marker (Alarcón et al. 2020). RPRML expression in colorectal cancer cells is dependent on FRMD5 and CTNNB1 (β-catenin) expression, both components of the canonical Wnt signaling pathway (Zhu et al., 2017). The biological and pathological function of RPRML remains to be fully elucidated.

Homology

RPRML is a member of the Reprimo (RPRM) gene family. In humans, it shares 52.5% amino acid sequence identity with RPRM, mainly in the C-terminal domain (Wichmann et al., 2016).

Mutations

Note

No pathogenic mutations have been reported. However, its locus at 17q21 is often affected by chromosome rearrangements and segmental amplifications in multiple tumors.

Implicated in

Entity name
Gastric Cancer
Disease
RPRML is silenced in gastric tumors. Circulating methylated RPRML DNA is detected in plasma samples from patients with gastric cancer and has been proposed as a potential biomarker for the diagnosis of disease (Alarcon et al., 2020).
Prognosis
RPRML loss of expression in gastric tumors is associated with worse prognosis in advanced stages of disease (Alarcon et al., 2020).

Bibliography

Reference NumberPubmed IDLast YearTitleAuthors
1333228372020The Reprimo-Like Gene Is an Epigenetic-Mediated Tumor Suppressor and a Candidate Biomarker for the Non-Invasive Detection of Gastric Cancer.Alarcón MA et al
2299417872018The Reprimo Gene Family: A Novel Gene Lineage in Gastric Cancer with Tumor Suppressive Properties.Amigo JD et al
3285626202017Reprimo tissue-specific expression pattern is conserved between zebrafish and human.Figueroa RJ et al
4310732232019The Reprimo gene family member, reprimo-like (rprml), is required for blood development in embryonic zebrafish.Stanic K et al
5274320652016Evolutionary history of the reprimo tumor suppressor gene family in vertebrates with a description of a new reprimo gene lineage.Wichmann IA et al
6281175512017Identification of FERM domain-containing protein 5 as a novel target of β-catenin/TCF7L2 complex.Zhu C et al

Other Information

Locus ID:

NCBI: 388394
HGNC: 32422
Ensembl: ENSG00000179673

Variants:

dbSNP: 388394
ClinVar: 388394
TCGA: ENSG00000179673
COSMIC: RPRML

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000179673ENST00000322329Q8N4K4

Expression (GTEx)

0
5
10
15
20
25
30
35
40

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
299417872018The Reprimo Gene Family: A Novel Gene Lineage in Gastric Cancer with Tumor Suppressive Properties.3

Citation

María Alejandra Alarcón ; Alejandro H. Corvalán

RPRML (Reprimo-like)

Atlas Genet Cytogenet Oncol Haematol. 2021-02-01

Online version: http://atlasgeneticsoncology.org/gene/57675/rprml