VMP1 (vacuole membrane protein 1)
2011-11-01 Alejandro Ropolo  , Andrea Lo Ré  , María Inés Vaccaro   AffiliationMolecular Pathophysiology Lab, School of Pharmacie, Biochemistry, University of Buenos Aires, Argentina
Identity
HGNC
LOCATION
17q23.1
LOCUSID
ALIAS
EPG3,TANGO5,TMEM49
FUSION GENES
DNA/RNA

Genomic organization of the VMP1/TMEM49 gene.
Description
12 exons, spans approximately 133 kb of genomic DNA in the centromere-to-telomere orientation. The translation initiation codon is located to exon 2, and the stop codon to exon 12.
Transcription
mRNA of 2,17 kb.
Proteins

Schematic representation of VMP1 protein and localization of transmembrane domains.
Description
The pancreatitis-associated protein vacuole membrane protein 1 (VMP1) is a transmembrane protein of 406 amino-acid length containing 6 putative transmembrane domains and with no known homologues in yeast.
Expression
VMP1 was characterized because is not constitutively expressed in pancreatic acinar cells and it is highly activated early during experimental acute pancreatitis in acinar cells.
Localisation
Autophagosomal membrane.
Function
VMP1 is an autophagy-related membrane protein. VMP1 expression triggers autophagy, even under nutrient-replete conditions. VMP1 is required for autophagosome development through interaction with Beclin1. Recently, it has been demonstrated that participate in a novel selective form of autophagy, called zymophagy, mediated by VMP1-USP9x-p62 pathway during acute pancreatitis.
Implicated in
Entity name
Pancreatic cancer
Disease
Pancreatic ductal adenocarcinoma is one of the most aggressive human malignancies with a 2-3% 5-year survival rate. This is due to both the aggressive nature of the disease and the lack of specific symptoms and early-detection tools. It is relatively refractory to traditional cytotoxic agents and radiotherapy. Gemcitabine, the standard chemotherapy agent for the treatment of pancreatic cancer, induces autophagy of cancer cells and that this process mediates the cell death-promoting activity of this compound. Early induction of autophagy by gemcitabine leads to cancer cell death and this cellular process is mediated by the activation of VMP1 expression. In PANC-1 and MIAPaCa-2 cells the inhibition of autophagy significantly reduced the percentage of dead cells in response to gemcitabine. In addition, gemcitabine promoted early VMP1 expression, and downregulation of VMP1 expression significantly reduced cell death.
Entity name
Acute pancreatitis
Disease
VMP1 was characterized because is not constitutively expressed in pancreatic acinar cells and it is highly activated early during experimental acute pancreatitis in acinar cells. VMP1 is an autophagy-related membrane protein involved in the initial steps of the mammalian cell autophagic process. VMP1 is a transmembrane protein that co-localizes with LC3, a marker of the autophagosomes, in pancreas tissue undergoing pancreatitis-induced autophagy. VMP1 interacts with with Beclin1, a mammalian autophagy initiator, to start autophagosome formation. We developed the ElaI-VMP1 mouse in which acinar cell-specific constitutive expression of a VMP1-EGFP chimera induces the formation of autophagosomes. Upon CCK-R hyperstimulation, wild type mice developed acute pancreatitis with high amylase and lipase serum levels. On the contrary, enzymatic levels in cerulein-treated ElaI-VMP1 mice were significantly lower compared to wild type mice. Consistently, ElaI-VMP1 mouse pancreata showed remarkably less macroscopic evidence of acute pancreatitis compared to wild type animals, which showed marked edema and hemorrhage. Histological analyses displayed a high degree of necrosis as well as infiltration in wild type pancreata with acute pancreatitis. In contrast, neither necrosis nor significant inflammation was seen in cerulein-treated ElaI-VMP1 mice. ElaIVMP1 mice showed secretory granules with normal ultrastructural characteristics CCK-R hyperstimulation in wild type animals induced a markedly altered distribution pattern of the secretory granules. Acinar cells lose their polarity, which results in the relocation of zymogen granules to the basolateral membrane. These alterations in vesicular traffic are known to occur in acinar cells during acute pancreatitis and upon hyperstimulation of their CCK-R with cerulein. ElaI-VMP1 mice subjected to CCK-R hyperstimulation revealed that acinar cells preserve their structure and polarity with negligible or no alteration in vesicular transport. Surprisingly, in pancreata from cerulein-treated ElaI-VMP1 mice, we observed autophagosomes containing zymogen granules displaying a distinct localization to the apical area of the acinar cell. VMP1, the ubiquitin-protease USP9x, and the ubiquitin-binding protein p62 mediate this process. Moreover, VMP1 interacts with USP9x, indicating that there is a close cooperation between the autophagy pathway and the ubiquitin recognition machinery required for selective autophagosome formation. We have coined the term "zymophagy" to refer to this process. Zymophagy is activated by experimental pancreatitis and by acute pancreatitis in humans. Furthermore, zymophagy has pathophysiological relevance by controlling pancreatitis-induced intracellular zymogen activation and helping to prevent cell death. This new selective autophagy is activated in pancreatic acinar cells during pancreatitis-induced vesicular transport alteration to sequester and degrade potentially deleterious activated zymogen granules.

Confocal microscopy of AR42J cell transfected with pEGFP-VMP1.
Entity name
Diabetes
Disease
Experimental diabetes activates VMP1 expression and autophagy in pancreas beta cells as a direct response to streptozotocin (STZ). VMP1 mRNA expression is activated after STZ treatment by islet beta cells. Electron microscopy shows chromatin aggregation and autophagy morphology that was confirmed by LC3 expression and LC3-VMP1 co-localization. Apoptotic cell death and the reduction of beta cell pool are evident after 24h treatment, while VMP1 is still expressed in the remaining cells. VMP1-Beclin1 colocalization in pancreas tissue from STZ-treated rats suggests that VMP1-Beclin1 interaction is involved in the autophagic process activation during experimental diabetes. Pancreas beta cells trigger VMP1 expression and autophagy during the early cellular events in response to experimental diabetes.
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 11785947 | 2002 | Cloning and expression of the rat vacuole membrane protein 1 (VMP1), a new gene activated in pancreas with acute pancreatitis, which promotes vacuole formation. | Dusetti NJ et al |
| 21173155 | 2011 | Zymophagy, a novel selective autophagy pathway mediated by VMP1-USP9x-p62, prevents pancreatic cell death. | Grasso D et al |
| 19077458 | 2009 | Autophagy and VMP1 expression are early cellular events in experimental diabetes. | Grasso D et al |
| 15367889 | 2004 | Expression of vacuole membrane protein 1 (VMP1) in spontaneous chronic pancreatitis in the WBN/Kob rat. | Jiang PH et al |
| 20299819 | 2010 | Gemcitabine induces the VMP1-mediated autophagy pathway to promote apoptotic death in human pancreatic cancer cells. | Pardo R et al |
| 17940279 | 2007 | The pancreatitis-induced vacuole membrane protein 1 triggers autophagy in mammalian cells. | Ropolo A et al |
| 18253086 | 2008 | A novel mammalian trans-membrane protein reveals an alternative initiation pathway for autophagy. | Vaccaro MI et al |
| 18714176 | 2008 | Autophagy and pancreas disease. | Vaccaro MI et al |
Other Information
Locus ID:
NCBI: 81671
MIM: 611753
HGNC: 29559
Ensembl: ENSG00000062716
Variants:
dbSNP: 81671
ClinVar: 81671
TCGA: ENSG00000062716
COSMIC: VMP1
RNA/Proteins
Expression (GTEx)
Pathways
| Pathway | Source | External ID |
|---|---|---|
| Autophagy - animal | KEGG | ko04140 |
| Autophagy - animal | KEGG | hsa04140 |
Protein levels (Protein atlas)
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 38009649 | 2024 | CircVMP1 promotes glycolysis and disease progression by upregulating HKDC1 in colorectal cancer. | 0 |
| 38403678 | 2024 | Palmitoylation of vacuole membrane protein 1 promotes small extracellular vesicle secretion via interaction with ALIX and influences intercellular communication. | 2 |
| 38411635 | 2024 | Altered vacuole membrane protein 1 (VMP1) expression is associated with increased NLRP3 inflammasome activation and mitochondrial dysfunction. | 1 |
| 38612567 | 2024 | Decoding the Versatile Landscape of Autophagic Protein VMP1 in Cancer: A Comprehensive Review across Tissue Types and Regulatory Mechanisms. | 2 |
| 38009649 | 2024 | CircVMP1 promotes glycolysis and disease progression by upregulating HKDC1 in colorectal cancer. | 0 |
| 38403678 | 2024 | Palmitoylation of vacuole membrane protein 1 promotes small extracellular vesicle secretion via interaction with ALIX and influences intercellular communication. | 2 |
| 38411635 | 2024 | Altered vacuole membrane protein 1 (VMP1) expression is associated with increased NLRP3 inflammasome activation and mitochondrial dysfunction. | 1 |
| 38612567 | 2024 | Decoding the Versatile Landscape of Autophagic Protein VMP1 in Cancer: A Comprehensive Review across Tissue Types and Regulatory Mechanisms. | 2 |
| 37629161 | 2023 | Ubiquitination Is a Novel Post-Translational Modification of VMP1 in Autophagy of Human Tumor Cells. | 2 |
| 37629161 | 2023 | Ubiquitination Is a Novel Post-Translational Modification of VMP1 in Autophagy of Human Tumor Cells. | 2 |
| 35452693 | 2022 | Lack of VMP1 impairs hepatic lipoprotein secretion and promotes non-alcoholic steatohepatitis. | 19 |
| 35536318 | 2022 | VMP1 and TMEM41B are essential for DMV formation during β-coronavirus infection. | 22 |
| 35696974 | 2022 | VMP1 promotes exosome secretion and enhances 5-FU resistance in colon cancer cells. | 1 |
| 36088075 | 2022 | Protein expression in exocrine pancreatic diseases. Focus on VMP1 mediated autophagy. | 0 |
| 35452693 | 2022 | Lack of VMP1 impairs hepatic lipoprotein secretion and promotes non-alcoholic steatohepatitis. | 19 |
Citation
Alejandro Ropolo ; Andrea Lo Ré ; María Inés Vaccaro
VMP1 (vacuole membrane protein 1)
Atlas Genet Cytogenet Oncol Haematol. 2011-11-01
Online version: http://atlasgeneticsoncology.org/gene/50079/vmp1
