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FIM (fused in myeloproliferative disorders).

Identity

Other namesZNF198 (zinc finger protein 198).
RAMP
HGNC (Hugo) ZMYM2
Location 13q12
Location_base_pair Starts at 19430810 and ends at 19558939 bp from pter ( according to hg18-Mar_2006)  [Mapping]
Local_order proximal from FLT1 and FLT3
 
  FIM (13q12) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are welcome : contact rocchi@biologia.uniba.it

DNA/RNA

Description full length cDNA: 5,016 bp; a single open reading frame of 4,137 bp; alternative spliced cDNA variant
Transcription main transcripts: 5.0 and 7.5 kb

Protein

 
Description 1 379 amino acids; hydrophobic protein containing several motifs: a N-terminal cystein-rich region containing ten repeats with the consensus sequence C-X2-C-X18-24-F/Y-C-X3-C, which correspond to a novel zinc finger motifs, a highly hydrophobic proline-rich stretch, and a bipartite nuclear localization signal
Expression wide
Localisation cell nucleus and nucleolus; within the nucleolus, colocalizes with UBF (Upstream Binding Factor)
Function may be involved in the regulation of rRNA transcription
Homology FIM is related to DXS6673E, a gene which may be related with mental retardation

Implicated in

Entity t(8;13)(p12;q12)/ANLL-NHL --> 5' FIM - 3' FGFR1 ; stem-cell myeloproliferative disorder associated with the 8p12 chromosomal translocations; fused to the catalytic domain of FGFR1
Disease stem-cell myeloproliferative disorder characterized by myeloid hyperplasia, T -cell lymphoblastic leukemia/lymphoma and peripheral blood eosinophilia, and it generally progresses to acute myeloid leukemia; specific to the 8p12 chromosomal region
Prognosis very poor (median survival: 12 mths)
Cytogenetics usually, t(8;13)(p12;q12) occurs as a single anomaly; duplication of the der(13) was found during disease progression, suggesting that the crucial event might lie on this derivative chromosome; additional abnormalities:+8, +21
 
Hybrid/Mutated Gene 5' FIM - 3' FGFR1; localisation: der(13)
Abnormal Protein aberrant tyrosine kinase composed of the N-term two-thirds of FIM (retaining the 10 putative zinc finger motifs), and the FGFR1 intracellular region minus the major part of the juxtamembrane domain
Oncogenesis constitutive kinase activity of FGFR1 through constitutive activation of FGFR1 signal transduction pathways via constitutive dimerization capability mediated by the FIM N-term zinc finger sequences
  

External links

Nomenclature
HGNC (Hugo)ZMYM2   12989
Entrez_Gene (NCBI)ZMYM2  7750  zinc finger, MYM-type 2
Cards
AtlasZNF198ID114
GeneCards (Weizmann)ZMYM2
Ensembl (Hinxton)ENSG00000005801 [Gene_View]  ZMYM2 [Vega]
AceView (NCBI)ZMYM2
Genatlas (Paris)ZMYM2
euGene (Indiana)7750
SOURCE (Stanford)NM_003453 NM_197968
Genomic and cartography
GoldenPath (UCSC)ZMYM2  -  13q12   chr13:19430810-19558939 +  13q11-q12   [Description]    (hg18-Mar_2006)
EnsemblZMYM2 - 13q11-q12 [CytoView]
Mapping of homologs : NCBIZMYM2 [Mapview]
OMIM602221   
Gene and transcription
Gene : Genbank (Entrez)AF012126 AF035374 AF060181 AJ224901 AK226118
Reference sequence (RefSeq transcript) :SRSNM_003453 NM_197968
Reference transcript : EntrezNM_003453 NM_197968
RefSeq genomic : SRSAC_000056 AC_000145 NC_000013 NT_024524 NW_001838069 NW_925473
RefSeq genomic : EntrezAC_000056 AC_000145 NC_000013 NT_024524 NW_001838069 NW_925473
Consensus coding sequences : CCDS NCBIZMYM2
Cluster EST : UnigeneHs.644041 [ SRS ] Hs.644041 [ NCBI ]
Alternative Splicing : Fast-db (Paris)384
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9UBW7 (SRS) Q9UBW7 (Expasy) Q9UBW7 (Uniprot)
With graphics : InterProQ9UBW7
Splice isoforms : VarSplice FASTAQ9UBW7(VarSplice FASTA)
Domains : Interpro (SRS)TRASH    Znf_MYM   
Domains : Interpro (EBI)TRASH    Znf_MYM   
Related proteins : CluSTrQ9UBW7
Domain families : Pfam SRSzf-MYM (PF06467)   
Domain families : Pfam Sangerzf-MYM (PF06467)   
Domain families : Pfam NCBIpfam06467   
Domain families : Smart EMBLTRASH (SM00746)
Blocks (Seattle)Q9UBW7
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD03745
Protein Interaction databases
DIP (DOE-UCLA)Q9UBW7
IntAct (EBI)Q9UBW7
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIZMYM2
SNP : GeneSNP UtahZMYM2
SNP : HGBaseZMYM2
Genetic variants : HAPMAPZMYM2
Somatic Mutations in Cancer : COSMICZMYM2 
Translocation Breakpoints in Cancer : TICdbZMYM2 
Mutations and Diseases : HGMDZMYM2
Hereditary diseases : OMIM602221   
Hereditary diseases : GENETests602221   
Diseases : Genetic AssociationZMYM2
General knowledge
Homologs : HomoloGeneZMYM2
Homology/Alignments : Family Browser UCSCZMYM2
Phylogenetic Trees/Animal Genes : TreeFamZMYM2
Chemical/Protein Interactions : CTD7750
Keywords Ontology : AmiGOprotein binding  cellular_component  nucleus  transcription  regulation of transcription, DNA-dependent  biological_process  zinc ion binding  metal ion binding  
Keywords Ontology : EGO-EBIprotein binding  cellular_component  nucleus  transcription  regulation of transcription, DNA-dependent  biological_process  zinc ion binding  metal ion binding  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
Probes : ImagenesZMYM2 Related clones (RZPD - Berlin)
Literature
PubMed29 Pubmed reference(s) in Entrez
PubGeneZMYM2

Bibliography

Fibroblast growth factor receptor 1 is fused to FIM in stem-cell myeloproliferative disorder with t(8;13).
Popovici C, Adˆ©laˆØde J, Ollendorff V, Chaffanet M, Guasch G, Jacrot M, Leroux D, Birnbaum D, Pˆ©busque MJ
Proceedings of the National Academy of Sciences of the United States of America. 1998 ; 95 (10) : 5712-5717.
PMID 9576949
 
The t(8;13)(p11;q11-12) rearrangement associated with an atypical myeloproliferative disorder fuses the fibroblast growth factor receptor 1 gene to a novel gene RAMP.
Smedley D, Hamoudi R, Clark J, Warren W, Abdul-Rauf M, Somers G, Venter D, Fagan K, Cooper C, Shipley J
Human molecular genetics. 1998 ; 7 (4) : 637-642.
PMID 9499416
 
FGFR1 is fused with a novel zinc-finger gene, ZNF198, in the t(8;13) leukaemia/lymphoma syndrome.
Xiao S, Nalabolu SR, Aster JC, Ma J, Abruzzo L, Jaffe ES, Stone R, Weissman SM, Hudson TJ, Fletcher JA
Nature genetics. 1998 ; 18 (1) : 84-87.
PMID 9425908
 
Characterization of FIM-FGFR1, the fusion product of the myeloproliferative disorder-associated t(8;13) translocation.
Ollendorff V, Guasch G, Isnardon D, Galindo R, Birnbaum D, Pˆ©busque MJ
The Journal of biological chemistry. 1999 ; 274 (38) : 26922-26930.
PMID 10480903
 
ZNF198-FGFR1 transforming activity depends on a novel proline-rich ZNF198 oligomerization domain.
Xiao S, McCarthy JG, Aster JC, Fletcher JA
Blood. 2000 ; 96 (2) : 699-704.
PMID 10887137
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written03-1998Jean-Loup Huret, Dominique Leroux
Department of Genetics, University Joseph Fourier, Grenoble, France
Updated01-2001Marie-Joséphe Pébusque

Citation

This paper should be referenced as such :
Huret JL, Leroux D . FIM (fused in myeloproliferative disorders).. Atlas Genet Cytogenet Oncol Haematol. March 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/ZNF198ID114.html
Pébusque MJ . FIM (fused in myeloproliferative disorders).. Atlas Genet Cytogenet Oncol Haematol. January 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/ZNF198ID114.html

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