Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Chromosome 6

Chromosome 6 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret
Chromosome 6 diagrams ISCN 2009 - Courtesy Nicole Chia

Leukaemia     

der(6)t(1;6)(q21-23;p21)
t(1;6)(p35;p25)
t(1;6)(p36;p21)
t(3;6)(q25;q26)
t(3;6)(q27;p21) SFRS3/BCL6
t(3;6)(q27;p21) PIM1/BCL6
t(3;6)(q27;p21)
t(3;6)(q27;q15) (NHL; BCL6 and SNHG5; rare)
del(6q) abnormalities in lymphoid malignancies
del(6q) in Multiple Myeloma
i(6)(p10)
inv(6)(p15q13)
inv(6)(p25q13)
+6 or trisomy 6
t(6;7)(q23;q34)
t(6;8)(q11;q11)
t(6;8)(q27;p12)
t(6;9)(p23;q34)
t(6;11)(q13;q23)
t(6;11)(q15;q23)
t(6;11)(q21;q23) (AML, T-NHL; AF6q21 and MLL; rare)
t(6;11)(q27;q23)
t(6;12)(p21;p13) in lymphoid malignancies
t(6;12)(q15;p13)/NHL (AML, T-CLD; - ; rare)
t(6;12)(q21-22;p13) (AML, B-ALL, T-ALL, CLD; FRK and ETV6 in AML; rare)
t(6;12)(q22-23;p13) (Cell line (B-ALL); STL and ETV6; rare)
t(6;14)(p21;q32)
t(6;14)(p22;q32)
t(6;14)(p25;q32) ( CLD; IRF4 and IgH; rare)
t(6;14)(q25-27;q32)
t(6;21)(p22;q22)
t(X;6)(p11;q23)

Solid Tumors     

inv(6)(p13;q25)
6p21 rearrangements
t(6;11)(p21;q12)

Cancer prone diseases     

All Genes by Location (Kb)
Chromosome 6 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 6 - HUGO Chromosomes
  • Chromosome 6 - GoldenPath - Santa Cruz
  • Chromosome 6 - Ensembl Project
  • Chromosome 6 - Map View - NCBI
  • Chromosome 6 - OMIM Gene map
  • Chromosome 6 - Genomic Variants
  • Chromosome 6 - HAPMAP Project
  • Chromosome 6 - Genome Channel - ORNL
  • Chromosome 6 - LaunchPad HGMIS
  • Chromosome 6 - Human Protein Atlas
  • Chromosome 6 - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome 6 - Human BAC Resource (NCBI)
  • Chromosome 6 FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome 6 Cancer GeneWeb
  • Chromosome 6 GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    AKAP12 151646.822 6q24-q25
    BAK1 33541.580 6p21.3
    CAGE1 7326.918 6p24.3
    CDKN1A 36646.498 6p21.2
    CITED2 139693.396 6q23.3
    CTGF 132269.504 6q23.1
    DDX43 74104.470 6q12-q13
    DEK 18224.412 6p22.3
    E2F3 20491.992 6p22
    EEF1A1 74227.468 6q14.1
    EPHA7 93953.064 6q16.1
    FANCE 35420.137 6p22-p21
    FGFR1OP 167412.915 6q27
    FOXO3 109002.318 6q21
    HFE 26087.632 6p21.3
    HMGA1 34205.077 6p21
    ID4 19840.182 6p22.3
    IGF2R 160412.295 6q26
    IRF4 396.477 6p25-p23
    LATS1 149982.503 6q25.1
    MAP3K7 91225.352 6q15
    MAPK13 36097.878 6p21.31
    MLLT4 168227.847 6q27
    MYB 135502.572 6q22-q23
    PIM1 37138.363 6p21.2
    POLH 43543.944 6p21.1
    PPARD 35310.372 6p21.2
    RNASET2 167343.012 6q27
    RUNX2 45296.059 6p21
    SMAP1 71377.575 6q13
    SOX4 21593.981 6p22.3
    TFAP2A 10409.318 6p24
    TNFAIP3 138188.372 6q23
    WISP3 112375.558 6q21
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABCC10 43395.291 6p21.1
    ACAT2 160183.098 6q25.3
    AIG1 143380.499 6q24.2
    AKAP7 131571.707 6q23
    AMD1 111196.020 6q21
    ARG1 131900.531 6q23
    ARHGAP18 129898.240 6q22.33
    ATG5 106634.408 6q21
    BAG2 57037.333 6p12.1-p11.2
    BAI3 69347.436 6q12
    BCLAF1 136582.401 6q22-q23
    BMP5 55620.255 6p12.1
    BMP6 7726.331 6p24-p23
    BVES 105548.495 6q21
    BYSL 41889.209 6p21.1
    CASP8AP2 90556.308 6q15
    CCDC28A 139094.914 6q23.1-q24.1
    CCNC 99991.366 6q21
    CCND3 41902.693 6p21
    CCR6 167536.584 6q27
    CD109 74405.826 6q13
    CD164 109690.055 6q21
    CD83 14118.002 6p23
    CDC5L 44355.478 6p21
    CDK19 110931.180 6q21
    CENPW 126660.934 6q22.32
    CGA 87795.302 6q12-q21
    CNR1 88853.559 6q14-q15
    CPNE5 36708.554 6p21.1
    CRISP2 49660.071 6p12.3
    CRISP3 49696.320 6p12.3
    CTAGE9 132029.869 6q23.2
    CUL7 43005.357 6p21.1
    CUL9 43160.849 6p21.1
    DACT2 168707.585 6q27
    DCDC2 24169.842 6p22.1
    DEF6 35265.633 6p21.33-p21.1
    DLL1 170591.329 6q27
    DSE 116692.188 6q22
    DSP 7541.849 6p24
    DUSP22 335.139 6p25.3
    ECHDC1 127610.776 6q22.33
    EDN1 12290.612 6p24.1
    EEF1E1 8080.124 6p24.3
    EFHC1 52285.111 6p12.3
    ENPP1 132129.328 6q22-q23
    ENPP3 131958.441 6q22
    EPM2A 145946.445 6q24
    ESR1 152129.047 6q25.1
    ETV7 36333.971 6p21
    EXOC2 486.099 6p25.3
    EYA4 133834.109 6q23
    EZR 159191.829 6q25.3
    F13A1 6144.317 6p25.3-p24.3
    FAM46A 82455.447 6q14
    FBXO30 146119.273 6q24
    FBXO5 153291.656 6q25.2
    FGD2 36973.475 6p21.2
    FKBP5 35548.333 6p21.31
    FNDC1 159618.478 6q25
    FOXC1 1612.576 6p25
    FOXF2 1390.182 6p25.3
    FOXO3B 108985.500 17p11
    FOXP4 41533.486 6p21.1
    FOXQ1 1312.674 6p25
    FRK 116263.564 6q21-q22.3
    FRS3 41737.913 6p21.1
    FYN 111982.943 6q21
    GCLC 53362.139 6p12
    GJA1 121756.791 6q21-q23.2
    GLO1 38643.722 6p21.3-p21.1
    GLP1R 39016.610 6p21
    GMDS 1624.041 6p25
    GMNN 24777.449 6p22.3
    GNMT 42928.503 6p12
    GOPC 117881.439 6q21
    GPLD1 24429.061 6p22.1
    GRM1 146350.666 6q24
    GRM4 34021.955 6p21.3
    GSTA1 52657.288 6p12.1
    GSTA2 52614.938 6p12.1
    GTF2H5 158589.402 6q25.3
    HACE1 105175.969 6q16.3
    HCRP1 42326.529 6p21.1
    HECA 139456.248 6q23-q24
    HEY2 126070.826 6q21
    HIST1H1A 26017.262 6p21.3
    HIST1H2AC 26124.399 6p21.3
    HIST1H4I 27107.060 6p21.33
    HLA-DQA1 32605.207 6p21.3
    HLA-DQB1 32627.246 6p21.3
    HMGN3 79910.965 6q14.1
    HMGN4 26538.624 6p21.3
    HSF2 122720.769 6q22.31
    HSP90AB1 44217.242 6p12
    HULC 8652.441 6p24.3
    HUS1B 656.109 6p25.3
    ICK 52866.097 6p12.1
    IFNGR1 137519.017 6q23.3
    IL17A 52051.186 6p12
    IL17F 52101.485 6p12
    IL20RA 137321.108 6q23.3
    IP6K3 33689.461 6p21.31
    ITPR3 33631.311 6p21
    JARID2 15512.558 6p24-p23
    KHDRBS2 62458.935 6q11.1
    KIAA1244 138576.717 6q23.3
    LAMA2 129636.964 6q22-q23
    LAMA4 112430.334 6q21
    LGSN 63989.559 6pter-q22.33
    LIN28B 105404.922 6q21
    LPA 160966.471 6q26
    MAK 10764.433 6p24
    MAP3K5 136878.765 6q22.33
    MAP7 136666.993 6q23.3
    MAPK14 35995.934 6p21.3-p21.2
    MAS1 160327.972 6q25.3-q26
    MCM3 52128.816 6p12
    MED23 131907.872 6q22.33-q24.1
    MEP1A 46761.125 6p12-p11
    MRS2 24424.325 6p22.3-p22.1
    MTCH1 36935.916 6pter-p24.1
    MYO6 76459.048 6q13
    NCOA7 126112.159 6q22.32
    NCR2 41303.588 6p21.1
    NDUFAF4 97338.890 6q16.1
    NFKBIE 44226.430 6p21.1
    NKAIN2 124125.181 6q21
    NOX3 155716.503 6q25.3
    NQO2 3000.207 6pter-q12
    NR2E1 108487.969 6q21
    NRN1 5998.234 6p25.1
    NRSN1 24126.485 6p22.3
    NT5E 86159.826 6q14-q21
    NUP153 17615.268 6p22.3
    OPRM1 154360.498 6q24-q25
    ORC3L 88299.860 6q14.3-q16.1
    PACRG 163149.001 6q26
    PARK2 161769.670 6q25.2-q27
    PBOV1 138537.128 6q23-q24
    PCMT1 150070.847 6q24-q25
    PDCD2 170890.835 6q27
    PDE10A 165744.534 6q26
    PDE7B 136172.833 6q23-q24
    PDSS2 107475.823 6q21
    PERP 138412.734 6q24
    PEX6 42931.746 6p21.1
    PGC 41704.449 6p21.3-p21.1
    PI16 36922.513 6p21.2
    PKIB 122931.577 6q22.31
    PLG 161123.275 6q26
    POU3F2 99282.579 6q16
    PPP1R14C 150464.314 6q24.3-q25.3
    PPP2R5D 42952.401 6p21.1
    PRDM1 106534.194 6q21
    PRICKLE4 41749.095 6p21.31
    PRIM2 57182.425 6p12-p11.1
    PRL 22287.479 6p22.2-p21.3
    PRPF4B 4021.595 6p25.2
    PRPH2 42665.994 6p21.2-p12.3
    PTCRA 42883.807 6p21.3
    PTK7 43044.106 6p21.1-p12.2
    PTP4A1 64286.785 6q12
    PTPRK 128321.131 6q22.2-q22.3
    QKI 163835.674 6q26
    QRSL1 107077.458 6q21
    RAB23 57055.260 6p11
    RAB32 146865.007 6q24.3
    RAB44 36665.627 6p21.31-p21.2
    RAET1E 150209.759 6q25.1
    RANBP9 13622.185 6p23
    RCAN2 46188.472 6p12.3
    REV3L 111620.236 6q21
    RIOK1 7402.879 6p24.3
    RIPK1 3064.212 6p25.2
    RIPPLY2 84563.019 6q14.2
    RNF144B 18387.593 6p22.3
    RNF146 127607.760 6q22.1-q22.33
    RNF8 37321.828 6p21.3
    ROS1 117609.529 6q22
    RPL10A 35436.196 6p21.31
    RPS12 133135.712 6q23.2
    RRAGD 90077.599 6q15-q16
    RREB1 7108.263 6p25
    SASH1 148663.985 6q24.3
    SCGN 25652.631 6p22.3-p22.1
    SEC63 108192.909 6q21
    SERINC1 122764.498 6q22.31
    SERPINB6 2948.546 6p25
    SERPINB9 2888.702 6p25
    SESN1 109307.646 6q21
    SFRS18 99847.843 6q16.3
    SGK1 134490.389 6q23
    SLC22A1 160542.904 6q26
    SLC22A16 110745.955 6q22.1|6q21-q22.1
    SLC22A2 160637.795 6q26
    SLC22A3 160868.775 6q25.3
    SLC29A1 44187.392 6p21.1
    SLC2A12 134310.363 6q23.2
    SMPDL3A 123110.420 6q22.31
    SNHG5 86386.797 6q14.3
    SNX3 108532.717 6q21
    SOD2 160100.150 6q25.3
    SPDEF 34505.579 6p21.3
    SRF 43139.284 6p21.1
    SRPK1 35800.811 6p21.31
    SRSF3 36564.539 6p21
    SSR1 7287.803 6p24.3
    STK38 36483.202 6p21
    STL 125229.393 6q22.33
    STX7 132779.065 6q23.1
    SUPT3H 44797.553 6p21.1-p21.3
    SYNE1 152442.914 6q25
    SYNJ2 158438.266 6q25.3
    T 166571.085 6q27
    TAB2 149639.062 6q25.1
    TBC1D7 13305.333 6p24.1
    TBCC 42712.772 6p21.1
    TBP 170863.469 6q27
    TBX18 85453.996 6q14-q15
    TCF21 134210.275 6pter-qter
    TDP2 24650.868 6p22.3-p22.1
    TFAP2B 50786.598 6p12
    TIAM2 155469.338 6q25.2
    TNFRSF21 47199.268 6p21.1
    TPD52L1 125524.864 6q22-q23
    TRAF3IP2 111913.084 6q21
    TRERF1 42193.437 6p21.1-p12.1
    TSG1 94416.800 6q16.1
    TTBK1 43220.520 6p21.1
    TTK 80713.863 6q13-q21
    TUBB2A 3154.098 6p25
    TUBB2B 3224.731 6p25
    TXNDC5 7883.376 6p24.3
    UBE2J1 90036.344 6q15
    ULBP1 150285.185 6q25
    ULBP2 150263.135 6q25
    UNC93A 167704.874 6q27
    UST 149068.463 6q25.1
    UTRN 145172.482 6q24
    VEGFA 43738.983 6p12
    VIP 153071.979 6q25
    VNN1 133002.734 6q23-q24
    WASF1 110421.647 6q21
    WRNIP1 2765.665 6p25.2
    WTAP 160164.767 6q25-q27
    XPO5 43490.074 6p21.1
    ZBTB2 151685.251 6q25.1
    ZKSCAN3 28317.690 6p22.1

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    Updated Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_6.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_6.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Wed Sep 1 08:31:58 CEST 2010
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