Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Chromosome 9

Chromosome 9 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret

Leukaemia     

t(1;9)(q24;q34)
t(2;9)(p11;p13)
t(3;9)(p13;p13) (ALL; FOXP1 and PAX5; rare):
t(3;9)(q26;p23)
t(5;9)(q33;q22)
t(6;9)(p23;q34)
dic(7;9)(p11-13;p11)
t(7;9)(q11;p13)
t(7;9)(q34;q32)
t(7;9)(q34;q34)
t(8;9)(p12;q33)
t(8;9)(p22;p24)
9p Rearrangements in ALL
del(9q) solely
I(9q) in ALL
t(9;9)(q34;q34)
+9 or trisomy 9
amplified NUP214/ABL1
t(9;11)(p22;q23)
t(9;11)(q34;q23) FBP17/MLL
t(9;11)(p22;p15)
t(9;11)(q34;p15)
t(9;11)(q34;q23) (AF9q34-MLL)
t(9;12)(p24;p13)
dic(9;12)(p13;p13)
t(9;12)(q22;p12)
t(9;12)(q34;p13)
t(9;14)(p13;q32)
t(9;14)(q34;q32)
t(9;17)(q34;q23) ( NHL; - ; rare)
der(9;18)(p10;q10)
dic(9;20)(p11-13;q11)
t(9;21)(p22;q22)
t(9;21)(q34;q22)
t(9;22)(q34;q11) in ALL
t(9;22)(q34;q11) in ANLL
t(9;22)(q34;q11) in CML
t(9;22)(p24;q11.2)
t(9;22)(q34;q11) in treatment related leukemia

Solid Tumors     

t(9;17)(q22;q11)
t(9;15)(q22;q21)
t(9;17)(q22;p13)
t(9;22)(q22;q12)
t(9;17)(q22;q11)
t(9;22)(q22;q12)

Cancer prone diseases     

Cartilage-hair hypoplasia (CHH)
Diaphyseal Medullary Stenosis with Malignant Fibrous Histiocytoma (DMS-MFH)
Familial melanoma
Melanoma-Astrocytoma syndrome
Naevoid basal cell carcinoma syndrome (NBCS)
Tuberous Sclerosis (TSC)

All Genes by Location (Kb)
Chromosome 9 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 9 - HUGO Chromosomes
  • Chromosome 9 - GoldenPath - Santa Cruz
  • Chromosome 9 - Ensembl Project
  • Chromosome 9 - Map View - NCBI
  • Chromosome 9 - GDB (Genome Data Base)
  • Chromosome 9 - OMIM Gene map
  • Chromosome 9 - Genomic Variants
  • Chromosome 9 - HAPMAP Project
  • Chromosome 9 - Genome Channel - ORNL
  • Chromosome 9 - LaunchPad HGMIS
  • Chromosome 9 - Human Protein Atlas
  • Chromosome 9 - SpliceNest
  • Human BAC Resource (NCBI)
  • FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Positional Cloning Project (Berlin Dahlem)
  • Mouse homology - OMIM - NCBI
  • Cancer GeneWeb
  • GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABL1 132700.652 9q34.1
    CDKN2A 21957.751 9p21
    DAB2IP 123369.220 9q33.1-q33.3
    FANCC 96901.157 9q22.3
    FANCG 35063.835 9p13
    FNBP1 131689.287 9q34
    JAK2 4975.245 9p24
    JMJD2C 6747.654 9p24-p23
    MLLT3 20334.968 9p22
    NOTCH1 138508.717 9q34.3
    NR4A3 101623.958 9q22
    NTRK2 86474.446 9q22.1
    NUP214 132990.802 9q34
    PAX5 36828.531 9p13.2
    PRRX2 131467.741 9q34.11
    PSIP1 15454.065 9p22.2
    PTCH1 97245.085 9q22.1-q31
    SET 130485.755 9q34
    SYK 92603.891 9q22
    TAL2 107464.599 9q32
    TNC 116822.626 9q32-q34
    TSC1 134756.557 9q34
    XPA 99477.012 9q22.3
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABO 135120.384 9q34.2
    ACO1 32374.601 9p21.1
    ADAMTS13 135276.941 9q34
    ADAMTSL1 18464.104 9p21.3
    ADFP 19105.759 9p22.1
    AGPAT2 138687.416 9q34.3
    AK1 129668.580 9q34.1
    AK3 4701.158 9p24.1
    ALDH1A1 74705.407 9q21.13
    ALDH1B1 38382.702 9p13
    ALDOB 103223.479 9q21.3-q22.2
    AMBP 115862.229 9q32-q33
    ANGPTL2 128889.449 9q34
    ANP32B 99785.310 9q22.32
    ANXA1 74956.601 9q21.13
    APTX 32962.608 9p13.3
    AQP3 33431.160 9p13
    ASS1 132309.915 9q34.1
    ASTN2 118227.328 9q33
    B4GALT1 33100.639 9p13
    BAG1 33242.470 9p12
    BICD2 94513.466 9q22.32
    BRD3 135887.784 9q34
    C9orf100 35649.341 9
    C9orf102 97677.721 9q22.32
    C9orf127 35819.229 9p13.3
    C9orf14 27235.683 9p21
    C9orf78 131629.385 9q34.2
    C9orf86 138822.202 9q34.3
    CA9 35663.915 9p12
    CARD9 138378.229 9q34
    CCL19 34679.567 9p13
    CCL21 34699.002 9p13
    CCL27 34651.893 9p13
    CCRK 89771.179 9q22.2
    CD274 5440.559 9p24.1
    CD72 35599.976 9p
    CDC14B 98302.216 9q22.3
    CDK5RAP2 122190.968 9q33.3
    CDK9 129588.126 9q34.1
    CDKN2B 21992.902 9p21
    CEL 134927.186 9q34.3
    CELP 134947.746 9q34.3
    CEP110 122890.395 9q33.2
    CIZ1 129968.165 9q34.1
    CKS2 91115.933 9q22
    CNTFR 34541.431 9p13
    COBRA1 139269.580 9q34
    CTNNAL1 110744.672 9q31.2
    CTSL1 89530.794 9q21.33
    CTSL2 98834.759 9q22.33
    DAPK1 89302.576 9q34.1
    DBC1 120968.729 9q32-q33
    DDX31 134459.497 9q34.2
    DDX58 32445.300 9p12
    DEC1 116943.918 9q32
    DIRAS2 92411.934 9q22.2
    DNAJA1 33015.209 9p13.3
    DNAJB5 34979.785 9p
    DNM1 130005.484 9q34
    ECM2 94297.420 9q22.3
    EDF1 138876.392 9q34.3
    ENDOG 130620.600 9q34.1
    ENG 129617.112 9q33-q34.1
    EPB41L4B 111041.833 9q22.1-q22.3
    FBP1 96405.238 9q22.3
    FBP2 96360.824 9q22.3
    FBXW2 122559.075 9q34
    FGD3 94776.538 9
    FOXB2 78824.391 9q21.2
    FOXD4 106.234 9p24.3
    FOXD4L3 70107.603 9q13
    FOXD4L4 42707.230 9q13
    FOXE1 99655.358 9q22
    FPGS 129605.329 9cen-q34
    FRMD3 85052.127 9q21.33
    FXN 70840.164 9q21.11
    GADD45G 91409.748 9q22.1-q22.2
    GALNT12 100609.802 9q22.33
    GALT 34636.635 9p13
    GAS1 88749.097 9q21.3-q22
    GCNT1 78263.888 9q13
    GDA 73954.113 9q21.13
    GFI1B 134843.919 9q34.13
    GGTA1 123257.139 9q33.2
    GNA14 79228.368 9q21
    GNAQ 79525.011 9q21
    GNE 36204.439 9p13.1
    GNG10 113463.682 9q31.3
    GOLM1 87830.878 9q21.33
    GPSM1 138348.726 9q34.3
    GRHPR 37412.707 9q12
    GRIN1 139153.430 9q34.3
    GSN 123101.900 9q33
    HEMGN 99728.894 9q22.33
    HNRNPK 85772.818 9q21.32-q21.33
    HSPA5 127036.948 9q33.3
    IER5L 130977.652 9q34.11
    IFNA1 21430.440 9p22
    IFNA13 21357.371 9p22
    IFNA17 21217.242 9p22
    IFNA2 21374.254 9p22
    IFNB1 21067.104 9p22
    IGFBPL1 38398.991 9p12
    IKBKAP 110669.621 9q31
    IL11RA 34643.932 9p13
    INPP5E 138442.893 9q34.3
    INSL4 5221.419 9p24
    KANK1 494.703 9p24.3
    KIAA0649 137511.469 9q34.3
    KLF4 109286.954 9q31
    KLF9 72189.333 9q21.11
    LAMC3 132874.325 9q31-q34
    LCN2 129951.553 9q34
    LHX3 138227.917 9q34.3
    LHX6 124004.679 9q33.2
    LPAR1 112675.875 9q
    MAN1B1 139101.200 9q34.3
    MAPKAP1 127239.494 9q34.11
    MELK 36562.905 9p13.1
    MIRN7-1 85774.483 9
    MIRNLET7A1 95978.060 9
    MLANA 5880.909 9p24.1
    MRPL41 139566.130 9q34.3
    MTAP 21792.635 9p21
    MUSK 112470.908 9q31.3-q32
    NANS 99858.842 9p24.1-p23
    NEK6 126060.070 9q33.3-q34.11
    NFIB 14071.847 9p24.1
    NINJ1 94923.592 9q22
    NOXA1 139437.668 9q34.3
    NPDC1 139053.743 9q34.3
    NPR2 35782.406 9p21-p12
    NR5A1 126283.336 9q33
    NR6A1 126324.524 9q33.3
    NUDT2 34319.504 9p13
    OGN 94186.070 9q22
    OMD 94216.348 9q22.31
    OPRS1 34624.720 9p13.3
    ORM1 116125.124 9q31-qter
    ORM2 116131.890 9q31-qter
    PAEP 137593.425 9q34
    PAPPA 117955.892 9q33.1
    PBX3 127549.487 9q33.3
    PCA3 78569.171 9q21-q22
    PDCD1LG2 5500.545 9p24.2
    PHF19 122671.674 9q34.11
    PIGO 35078.688 9p13.2
    PIP5K1B 70510.436 9q13
    PIP5KL1 129723.629 9q34.13
    PKN3 130504.623 9q34.13
    PLAA 26895.339 9p21
    POLE3 115209.342 9q33
    PPP2R4 130913.065 9q34
    PPP3R2 103393.718 9q31
    PPP6C 126948.673 9q33.3
    PRKACG 70817.271 9q13
    PRSS3 33785.559 9p13
    PRUNE2 78416.112 9q21.32
    PSAT1 80101.879 9q21.2
    PTENP1 33665.634 9p21
    PTGDS 138991.777 9q34.2-q34.3
    PTGES 131540.433 9q34.3
    PTGS1 124173.050 9q32-q33.3
    PTPN3 111180.337 9q31
    PTPRD 8304.246 9p24.1-p23
    RAB14 122980.236 9q32-q34.11
    RAB1C 37626.933 9p13.1
    RAD23B 109085.365 9q31.2
    RALGDS 134962.928 9q34.3
    RALGPS1 128716.874 9q33.3
    RAPGEF1 133441.978 9q34.3
    RASEF 84787.137 9q21.33
    RECK 36026.916 9p13.3
    RGS3 115265.830 9q32
    RLN1 5324.969 9pter-q12
    RLN2 5289.868 9pter-q12
    RMI1 85785.457 9q22.1
    RNF20 103335.954 9q22
    RNF38 36326.399 9p
    ROR2 93524.705 9q22
    RORB 76302.072 9q22
    RPL7A 135204.890 9q34
    RPS6 19366.254 9p21
    RXRA 136358.231 9q34.3
    S1PR3 90796.182 9q22.1-q22.2
    SDCCAG3 138416.195 9q34.3
    SEC61B 101024.391 9q22.32-q31.3
    SEMA4D 91181.972 9q22-q31
    SETX 134126.648 9q34
    SH2D3C 129540.846 9q33.1-q33.3
    SH3GL2 17569.194 9p22
    SHC3 90817.889 9q22.1
    SLC1A1 4480.444 9p24
    SLC35D2 98122.809 9q22.33
    SLC46A2 114681.021 9q32
    SMARCA2 2005.342 9p24.3
    SMC2 105896.652 9q31.1
    SMC5 72063.698 9q21.11
    SPIN1 90193.117 9q22.1
    STOML2 35089.889 9p13.1
    SURF1 135208.487 9q33-q34
    TAF1L 32619.452 9p21.1
    TEK 27099.147 9p21
    TESK1 35595.281 9p13
    TGFBR1 100907.233 9q22
    TJP2 70978.909 9q13-q21
    TLE1 83388.418 9q21.32
    TLN1 35687.334 9p23-p21
    TLR4 119506.431 9q33.1
    TMEFF1 102275.538 9q31
    TMOD1 99326.258 9q22
    TNFSF15 116591.432 9q32
    TNFSF8 116704.945 9q33
    TOPORS 32530.542 9p21
    TPD52L3 6318.375 9p24.1
    TPM2 35672.923 9p13
    TRAF1 122704.493 9q33-q34
    TRAF2 138900.786 9q34
    TRIM32 118489.402 9q33.1
    TRPM6 76527.231 9q21.13
    TTF1 134240.758 9q34.3
    TUBB2C 139255.532 9q34.3
    TUSC1 25666.387 9p21.2
    TXN 112046.131 9q31
    TYRP1 12683.386 9p23
    UBAP1 34169.011 9p13.3
    UBE2R2 33807.182 9p11.2
    UGCG 113699.027 9q31
    UHRF2 6403.151 9p24.1
    VAV2 135616.837 9q34.1
    VCP 35046.065 9p13-p12
    WNK2 94987.033 9q22.3

    GeneCards   GDB - List of genes

    This page should be referenced as such :
    Dessen P, Knuutila S, Huret JL Chromosome 9. Atlas Genet Cytogenet Oncol Haematol. 2002.
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_9.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Fri Aug 22 18:54:52 2008
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