Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Chromosome X

Chromosome X : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret
Chromosome X diagrams ISCN 2009 - Courtesy Nicole Chia

Leukaemia     

idic(X)(q13)
t(X;2)(q11;p23)
t(X;6)(p11;q23)
t(X;10)(p10;p10)
t(X;11)(q13;q23)
t(X;11)(q21;q23)
t(X;11)(q24;q23) (AML; SEPT6 and MLL; rare)
t(X;14)(q28;q11) (CLD; MTCP1 and TRA-D; rare)
t(X;20)(q13;q13.3)
t(X;21)(p11;q22)
t(X;21)(q26;q22)
t(X;21)(p22;q22)

Solid Tumors     

inv(X)(p11;q12)
t(X;1)(p11;q21)
t(X;17)(p11;q25)
t(X;17)(p11;q25)
t(X;17)(p11.2;q23)
t(X;17)(p11;q25)
t(X;18)(p11.2;q11.2)
(X;18)(p11;q11)
t(X;20)(p11;q13)

Cancer prone diseases     

Alport syndrome and diffuse leiomyomatosis
Bruton's agammaglobulinemia
Simpson-Golabi-Behmel syndrome

All Genes by Location (Kb)
Chromosome X by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome X - HUGO Chromosomes
  • Chromosome X - GoldenPath - Santa Cruz
  • Chromosome X - Ensembl Project
  • Chromosome X - Map View - NCBI
  • Chromosome X - OMIM Gene map
  • Chromosome X - Genomic Variants
  • Chromosome X - HAPMAP Project
  • Chromosome X - Genome Channel - ORNL
  • Chromosome X - LaunchPad HGMIS
  • Chromosome X - Human Protein Atlas
  • Chromosome X - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome X - Human BAC Resource (NCBI)
  • Chromosome X FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome X Cancer GeneWeb
  • Chromosome X GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    AIFM1 129263.511 Xq26.1
    AMOT 112018.155 Xq23
    ARMCX1 100805.513 Xq21.33-q22.2
    ARMCX2 100910.452 Xq21.33-q22.2
    ARMCX3 100878.172 Xq21.33-q22.2
    AR 66764.985 Xq12
    BTK 100604.858 Xq21.33-q22
    CXCR3 70835.766 Xq13
    DKC1 153991.180 Xq28
    FAM123B 63404.997 Xq11.2
    FOXO4 70316.378 Xq13.1
    FOXP3 49107.409 Xp11.23
    GPC3 132669.962 Xq26.1
    L1CAM 153128.117 Xq28
    MSN 64953.101 Xq11.1
    NONO 70518.692 Xq13.1
    RBBP7 16862.776 Xp22.2
    REPS2 17024.347 Xp22.2
    SEPT6 118749.689 Xq24
    SSX2 52786.930 Xp11.22
    TFE3 48887.247 Xp11.22
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABCD1 152991.191 Xq28
    ACE2 15579.909 Xp22
    ACOT9 23719.620 Xp22.11
    ACSL4 108884.565 Xq22.3-q23
    AKAP14 119030.155 Xq24
    AKAP4 49955.434 Xp11.2
    AMELX 11311.532 Xp22.31-p22.1
    AMMECR1 109441.617 Xq22.3
    APEX2 55026.795 Xp11.21
    APLN 128782.603 Xq25
    ARAF 47422.358 Xp11.4-p11.2
    ARHGAP6 11155.666 Xp22.3
    ARHGEF6 135863.034 Xq26.3
    ARHGEF9 62854.847 Xq11.1
    ARR3 69488.201 Xcen-q21
    ARSD 2831.654 Xp22.3
    ATG4A 107369.302 Xq22.1-q22.3
    ATP6AP1 153660.629 Xq28
    ATP6AP2 40440.254 Xp11.4
    ATP7A 77166.223 Xq21.1
    AVPR2 153170.567 Xq28
    BCOR 39931.173 Xp11.4
    BEX1 102317.585 Xq21-q23|Xq22
    BEX2 102564.281 Xq22
    BMP15 50653.783 Xp11.2
    BMX 15482.368 Xp22.2
    BRCC3 154299.804 Xq28
    BRS3 135570.273 Xq26-q28
    CASK 41378.779 Xp11.4
    CCNB3 50027.539 Xp11
    CD40LG 135730.407 Xq26
    CD99L2 149934.809 Xq28
    CETN2 151996.386 Xq28
    CHIC1 72902.816 Xq13.2
    CHM 85116.185 Xq21.2
    CITED1 71521.574 Xq13.1
    CLCN4 10126.327 Xp22.3
    COL4A5 107936.073 Xq22
    COL4A6 107400.155 Xq22
    COX7B 77154.978 Xq21.1
    CSAG1 151903.227 Xq28
    CSAG2 151927.733 Xq28
    CT45A1 134847.184 Xq26.3
    CT45A2 134866.213 Xq26.3
    CT45A3 134928.697 Xq26.3
    CT45A4 134961.634 Xq26.3
    CT45A5 134945.650 Xq26.3
    CT45A6 134963.215 Xq26.3
    CTAG1A 153845.864 Xq28
    CTAG1B 153845.864 Xq28
    CTAG2 153880.250 Xq28
    CTPS2 16607.671 Xp22
    CUL4B 119658.473 Xq23
    CXorf31 46746.855 Xp11.3
    CXorf48 134290.464 Xq26.3
    CYBB 37639.284 Xp21.1
    CYSLTR1 77528.229 Xq13.2-q21.1
    DACH2 85403.624 Xq21.3
    DCX 110544.917 Xq22.3-q23
    DDX3X 41193.462 Xp11.3-p11.23
    DDX53 23018.077 Xp22.11
    DIAPH2 96197.023 Xq21.33
    DLG3 69672.154 Xq13.1
    DMD 31137.337 Xp21.2
    EDA2R 65819.327 Xq12
    EDA 68835.910 Xq12-q13.1
    EFNB1 68048.839 Xq12
    EGFL6 13587.835 Xp22
    EIF1AX 20148.633 Xp22.12
    ELF4 129198.908 TUBGCP1
    ELK1 47494.920 ZP3-424, ZP3-372
    EMD 153607.842 FLJ38559
    ENOX2 129757.358 Xq25
    ERAS 48687.282 Xp11.23
    ERCC6L 71424.514 Xq13.1
    F8 154065.407 Xq28
    FAM46D 79591.002 Xq21.1
    FANCB 14861.528 Xp22.2
    FGD1 54471.886 Xp11.21
    FGF13 137713.735 Xq26.3
    FGF16 76709.646 Xq13
    FHL1 135252.089 Xq26
    FIGF 15363.717 Xp22.31
    FLNA 153576.898 Xq28
    FOXR2 55649.832 Xp11.21
    G6PD 153759.810 Xq28
    GAGE12I 49335.064 Xp11.23
    GAGE1 49335.002 Xp11.23
    GAGE2C 49226.199 Xp11.23
    GAGE2E 49226.160 Xp11.23
    GAGE3 49326.599 Xp11.4-p11.2
    GAGE4 49178.583 Xp11.4-p11.2
    GAGE5 49335.031 Xp11.4-p11.2
    GAGE6 49336.157 Xp11.4-p11.2
    GDI1 153665.600 Xq28
    GPC4 132435.063 Xq26.1
    GPR143 9693.453 Xp22.3
    GPR64 19007.432 Xp22.13
    GRIA3 122318.764 Xq25
    GRPR 16141.697 Xp22.2
    GUCY2F 108616.174 Xq22
    HCFC1 153213.009 Xq28
    HDAC6 48660.507 Xp11.23
    HDAC8 71787.435 Xq13
    HMGB3 150154.072 Xq28
    HPRT1 133594.194 Xq26.1
    HSD17B10 53458.207 Xp11.2
    HUWE1 53559.058 Xp11.22
    IGBP1 69353.298 Xq13.1-q13.3
    IKBKG 153775.865 Xq28
    IL13RA2 114238.546 Xq13.1-q28
    IL1RAPL1 28807.460 Xp22.1-p21.3
    IL2RG 70329.220 Xq13.1
    INE1 47064.325 Xp11.4-p11.3
    INGX 70711.530 Xq12
    IRAK1 153277.310 Xq28
    IRS4 107975.713 Xq22.3
    KCND1 48819.061 Xp11.23
    KDM6A 44732.470 Xp11.2
    KIF4A 69509.978 Xq13.1
    LAGE3 153706.114 Xq28
    LAMP2 119565.114 Xq24
    LCA10 153146.126 Xq28
    LDOC1 140269.941 Xq27
    LOC642869 84010.005 Xq21.1
    LONRF3 118109.324 Xq24
    LUZP4 114524.318 Xq23
    MAGEA10 151302.983 Xq28
    MAGEA12 151899.856 Xq28
    MAGEA1 152482.767 Xq28
    MAGEA2B 151918.911 Xq28
    MAGEA2 151918.911 Xq28
    MAGEA3 151934.651 Xq28
    MAGEA4 151085.408 Xq28
    MAGEA5 151283.455 Xq28
    MAGEA6 151867.247 Xq28
    MAGEA9B 148863.592 Xq28
    MAGEA9 148863.592 Xq28
    MAGEB10 27826.106 Xp21.3
    MAGEB18 26156.514 Xp21.3
    MAGEB1 30261.847 Xp21.3
    MAGEB2 30233.676 Xp21.3
    MAGEB4 30260.116 Xp21.3
    MAGEB6 26210.556 Xp21.3
    MAGEC1 140991.679 Xq26
    MAGEC2 141290.145 Xq27
    MAGEC3 140926.101 Xq27.2
    MAGED1 51638.706 Xp11.23
    MAGED2 54834.195 Xp11.2
    MAGED4B 51928.007 Xp11
    MAGED4 51928.007 Xp11.22
    MAGEE1 75648.116 Xq13.3
    MAGEE2 75003.315 Xq13.3
    MAGEH1 55478.537 Xp11.21
    MAP3K15 19378.177 Xp22.12
    MCF2 138664.601 Xq27
    MECP2 153290.202 Xq28
    MED14 40507.557 Xp11.4
    MORF4L2 102931.906 Xq22
    MPP1 154006.960 Xq28
    MST4 131157.326 Xq26.2
    MTM1 149737.058 Xq28
    NAA10 153197.279 Xq28
    NAP1L6 72345.875 Xq13.2
    NDUFA1 119005.874 Xq24
    NGFRAP1 102632.108 Xq22.2
    NOX1 100098.313 Xq22
    NUDT11 51232.863 Xp11.22
    NXF3 102330.752 Xq22
    OCRL 128674.231 Xq25
    OGT 70794.075 Xq13
    PAGE1 49452.055 Xp11.23
    PAGE4 49593.926 Xp11.23
    PAGE5 55246.809 Xp11.21
    PAK3 110366.331 Xq23
    PDHA1 19362.075 Xp22.1
    PGK1 77359.768 Xq13
    PGRMC1 118370.287 Xq22-q24
    PHF6 133507.455 Xq26.3
    PHKA2 18911.090 Xp22.2-p22.1
    PIGA 15337.579 Xp22.1
    PIM2 48771.009 Xp11.23
    PIR 15397.709 Xp22.2
    PLAC1 133699.872 Xq26
    PLS3 114795.520 Xq23
    PNCK 152936.693 Xq28
    PORCN 48368.205 Xp11.23
    PPEF1 18725.817 Xp22
    PPP1R2P9 42636.618 Xp11.3
    PRAF2 48928.819 Xp11.23
    PRDX4 23685.684 Xp22.11
    PRKX 3525.935 Xp22.3
    PRPS1 106871.836 Xq21.32-q24
    PSMD10 107327.438 Xq22.3
    RAB33A 129306.036 Xq26.1
    RAB39B 154487.526 Xq28
    RAB40AL 102192.199 Xq22.2
    RAB40A 102754.852 Xq22.1
    RAB9A 13726.865 Xp22.2
    RAB9B 103079.950 Xq22.1-q22.3
    RAP2C 131337.340 Xq25
    RBM10 47004.648 Xp11.23
    RGN 46940.256 Xp11.3
    RLIM 73810.051 Xq13-q21
    RNF128 105970.133 Xq22.3
    RP1-177G6.2 139791.931 Xq27.1
    RPA4 96139.011 Xq21.33
    RPL36A 100645.998 Xq22.1
    RPS6KA6 83318.983 Xq21
    S100G 16669.129 Xp22.2
    SAGE1 134975.784 Xq26
    SASH3 128913.943 Xq26
    SAT1 23801.289 Xp22.1
    SCML1 17755.628 Xp22
    SCML2 18257.433 Xp22
    SH3KBP1 19553.519 Xp22.1-p21.3
    SLC25A5 118602.390 Xq24-q26
    SLC6A14 115567.789 Xq23-q24
    SMARCA1 128582.378 Xq25
    SMC1A 53439.950 Xp11.22-p11.21
    SPANXA1 140677.858 Xq27.1
    SPANXB1 140096.760 Xq27.1
    SPANXB2 140096.760 Xq27.1
    SPANXD 140785.617 Xq27.1
    SPANXE 140785.568 Xq27.1
    SPANXN1 144329.106 Xq27
    SRPX2 99899.224 Xq21.33-q23
    SRPX 38008.594 Xp21.1
    SSR4 153060.117 Xq28
    SSX1 48114.806 Xp11.23
    SSX2B 52786.930 Xp11.22
    SSX3 48211.079 Xp11.23
    SSX4B 48262.893 Xp11.23
    SSX4 48262.893 Xp11.23
    SSX5 48045.655 Xp11.23
    SSX6 47969.361 Xp11.2
    SSX7 52674.494 Xp11.23
    SSX8 52651.984 Xp11.23
    SSX9 48156.255 Xp11.23
    STS 7137.532 Xp22.32
    SUV39H1 48555.130 Xp11.23
    SYP 49053.475 Xp11.23-p11.22
    TAB3 30845.559 Xp21.2
    TAF1 70608.168 Xq13.1
    TAZ 153646.813 Xq28
    TCEAL1 102883.926 Xq22.1
    TCEAL4 102840.440 Xq22.2
    TCEAL7 102585.182 Xq22.1
    TDGF3 109763.539 Xq22.3
    TEX13A 104463.611 Xq22.3
    TGIF2LX 89177.055 Xq21.31
    TIMM17B 48750.731 Xp11.23
    TIMM8A 100601.486 Xq22.1
    TKTL1 153524.154 Xq28
    TLR7 12903.629 Xp22.3
    TLR8 12937.161 Xp22
    TMSB15A 101768.610 Xq21.33-q22.3
    TMSB15B 103173.769 Xq22.2
    TMSB4X 12993.228 Xq21.3-q22
    TREX2 152710.178 Xq28
    TRO 54947.274 Xp11.22-p11.21
    TSC22D3 106956.450 Xq22.3
    TSPYL2 53112.301 Xp11.2
    UBA1 47071.056 Xp11.23
    UBE2A 118708.527 Xq24
    USP11 47092.433 Xp11.23
    UTP14A 129054.688 Xq26.1
    UXT 47511.198 Xp11.23-p11.22
    VENTXP1 26576.453 Xp21.3
    VSIG1 107288.320 Xq22.3
    WAS 48542.206 Xp11.4-p11.21
    XAGE1A 52541.055 Xp11.22
    XAGE1B 52541.055 Xp11.22
    XAGE1D 52541.055 Xp11.22
    XAGE2 52380.353 Xp11.22
    XAGE3 52891.559 Xp11.22
    XAGE5 52841.227 Xp11.22
    XIAP 122994.044 Xq25
    XIST 73043.161 Xq13.2
    ZBTB33 119388.959 Xq23
    ZC4H2 64136.367 Xq11.2
    ZDHHC9 128939.317 Xq26.1
    ZIC3 136648.345 Xq26.2
    ZNF185 152090.779 Xq28

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    Updated Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_X.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_X.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Wed Sep 1 08:31:56 CEST 2010
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