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Chromosome 15

Chromosome 15 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret
Chromosome 15 diagrams ISCN 2009 - Courtesy Nicole Chia

Leukaemia     

dic(1;15)(p11;p11)
t(5;15)(p15;q11-13)
t(5;15)(q33;q22)
t(11;15)(q23;q14)
t(12;15)(p13;q25)
t(14;15)(q32;q11-13)
15q13-15 Rearrangements
+15 or trisomy 15 (as sole autosomal abnormality)
t(15;17)(q22;q21)
t(15;17)(q22;q21) in treatment related leukemia
t(15;21)(q22;q22)

Solid Tumors     

t(9;17)(q22;q11)
t(9;15)(q22;q21)
t(12;15)(p13;q25)
t(11;22)(q24;q12)
t(15;19)(q14;p13)

Cancer prone diseases     

Bloom syndrome

All Genes by Location (Kb)
Chromosome 15 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 15 - HUGO Chromosomes
  • Chromosome 15 - GoldenPath - Santa Cruz
  • Chromosome 15 - Ensembl Project
  • Chromosome 15 - Map View - NCBI
  • Chromosome 15 - GDB (Genome Data Base)
  • Chromosome 15 - OMIM Gene map
  • Chromosome 15 - Genomic Variants
  • Chromosome 15 - HAPMAP Project
  • Chromosome 15 - Genome Channel - ORNL
  • Chromosome 15 - LaunchPad HGMIS
  • Chromosome 15 - Human Protein Atlas
  • Chromosome 15 - SpliceNest
  • Chromosome 15 - Array BAC clone - Roswell Park Cancer Institute
  • Chromosome 15 Human BAC Resource (NCBI)
  • Chromosome 15 FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Mouse homology - OMIM - NCBI
  • Chromosome 15 Cancer GeneWeb
  • Chromosome 15 GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    BCL8 19130.067 15q11-q13
    UBE3A 23133.489 15q11-q13
    TRPM1 29080.843 15q13-q14
    C15orf55 32425.358 15q14
    THBS1 37660.572 15q15
    BUB1B 38240.502 15q15
    PLCB2 38367.390 15q15
    CASC5 38673.739 15q14
    SPINT1 38923.935 15q15.1
    SHC4 46903.227 15q21.1-q21.2
    COPS2 47204.763 15q21.2
    MAPK6 50098.703 15q21
    TCF12 54998.125 15q21
    GCNT3 57691.274 15q21.3
    ITGA11 66381.096 15q23
    PKM2 70278.424 15q22
    PML 72074.067 15q22
    NEIL1 73426.384 15q24.2
    CTSH 77001.147 15q24-q25
    RASGRF1 77039.346 15q24.2
    NTRK3 86321.599 15q25
    BLM 89061.583 15q26.1
    IGF1R 97010.284 15q26.3
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    CYFIP1 20507.196 15q11
    NIPA2 20556.788 15q11.2
    NDN 21481.647 15q11.2-q12
    SNRPN 22751.228 15q11.2
    SNURF 22751.228 15q12
    PAR1 22931.881 15q11.2
    GABRB3 24339.787 15q11.2-q12
    OCA2 25673.616 15q11.2-q12
    HERC2 26029.783 15q13
    NDNL2 27347.650 15q13.1
    TJP1 27779.649 15q13
    MTMR15 28983.368 15q13.2-q13.3
    CHRNA7 30110.018 15q14
    ARHGAP11A 30694.983 15q13.2
    SCG5 30721.162 15q13-q14
    GREM1 30797.497 15q13-q15
    AVEN 31945.720 15q13.1
    SLC12A6 32309.489 15q13-q15
    MEIS2 34970.524 15q14
    SPRED1 36332.344 15q14
    RASGRP1 36567.594 15q14
    EIF2AK4 38013.639 15q15.1
    BMF 38167.383 15q14
    PAK6 38296.921 15q14
    RAD51 38774.651 15q15.1
    FAM82A2 38815.378 15q15.1
    DNAJC17 38847.363 15q15.1
    PPP1R14D 38894.935 15q15.1
    DLL4 39008.839 15q14
    INO80 39058.371 15q15.1
    CHP 39310.729 15q13.3
    ITPKA 39573.414 15q14-q21
    LTK 39583.132 15q15.1-q21.1
    TYRO3 39638.524 15q15.1-q21.1
    MAPKBP1 39853.924 15q15.1
    VPS39 40238.191 15q15.1
    CAPN3 40438.990 15q15.1-q21.1
    SNAP23 40575.127 15q15.1-q15.2
    TTBK2 40823.836 15q15.2
    CCNDBP1 41264.832 15q14-q15
    LCMT2 41407.266 15q15.3
    TP53BP1 41486.706 15q15-q21
    CKMT1B 41672.544 15q15
    CKMT1A 41772.376 15q15
    PDIA3 41825.882 15q15
    WDR76 41906.500 15q15.3
    CASC4 42368.221 15q15.3
    B2M 42790.977 15q21-q22.2
    DUOX2 43172.144 15q15.3
    DUOXA2 43193.816 15q15.1
    DUOXA1 43196.978 15q21.1
    DUOX1 43209.484 15q15.3
    C15orf48 43510.055 15q21.1
    SLC30A4 43561.970 15q11.2-q21.3|15q21.1
    C15orf21 43590.625 15q21.1
    SEMA6D 45797.978 15q21.1
    DUT 46410.913 15q15-q21.1
    FBN1 46487.797 15q21.1
    EID1 46957.582 15q21.1-q21.2
    FGF7 47502.667 15q15-q21.1
    DTWD1 47700.518 15q21.2
    HDC 48321.438 15q21-q22
    USP8 48503.871 15q21.2
    TRPM7 48639.782 15q21
    TNFAIP8L3 49136.091 15q21.2
    CYP19A1 49287.546 15q21.1
    GLDN 49421.005 15q21.2
    SCG3 49760.842 15q21
    TMOD2 49831.050 15q21.1-q21.2
    TMOD3 49909.181 15q21.1-q21.2
    BCL2L10 50189.114 15q21
    GNB5 50200.415 15q21.2
    MYO5A 50386.775 15q21
    ONECUT1 50836.645 15q21.1-q21.2
    RAB27A 53283.092 15q15-q21.1
    PIGB 53398.425 15q21-q22
    CCPG1 53434.730 15q21.1
    DYX1C1 53509.798 15q21.3
    NEDD4 53906.414 15q
    ALDH1A2 56032.919 15q21.3
    AQP9 56217.700 15q22.1-q22.2
    ADAM10 56675.802 15q2|15q22
    RNF111 57067.157 15q21
    CCNB2 57184.612 15q22.2
    LDHAL6B 57286.334 15q22.2
    BNIP2 57742.354 15q22.2
    FOXB1 58083.713 15q21-q26
    ANXA2 58426.642 15q21-q22
    RORA 58567.777 15q22.2
    TLN2 60726.802 15q15-q21
    TPM1 61121.891 15q22.1
    RPS27L 61232.592 15q22.2
    RAB8B 61268.781 15q22.2
    APH1B 61356.802 15q22.2
    CA12 61402.783 15q22
    HERC1 61687.870 15q22
    DAPK2 61986.288 15q22.31
    SNX1 62175.230 15q22.31
    PPIB 62235.067 15q21-q22
    CSNK1G1 62244.769 15q22.1-q22.31
    KIAA0101 62444.264 15q22.31
    UNQ353 62450.238 15q22.31
    RASL12 63132.728 15q11.2-q22.33
    PDCD7 63196.770 15q22.31
    DENND4A 63740.013 15q22.31
    RAB11A 63948.850 15q21.3-q22.31
    MAP2K1 64466.265 15q22.1-q22.33
    SMAD6 64788.008 15q21-q22
    SMAD3 65205.108 15q22.33
    MAP2K5 65622.075 15q23
    PIAS1 66133.626 15q
    CALML4 66270.097 15q23
    ANP32A 66857.931 15q22.3-q23
    NOX5 67009.918 15q23
    GLCE 67240.027 15q23
    KIF23 67493.742 15q23
    TLE3 68127.597 15q22
    CT62 69189.637 15q23
    HEXA 70422.832 15q23-q24
    ARIH1 70553.721 15q24
    NEO1 71131.928 15q22.3-q23
    CD276 71763.675 15q23-q24
    LOXL1 72005.842 15q24-q25|15q22
    STOML1 72062.613 15q24-q25
    CYP11A1 72417.156 15q23-q24
    ARID3B 72620.601 15q24
    CLK3 72694.388 15q24
    CYP1A1 72798.936 15q24.1
    CYP1A2 72828.237 15q24.1
    CSK 72861.478 15q23-q25
    LMAN1L 72892.247 15q24.1
    ULK3 72915.512 15q24.1
    MAN2C1 73435.186 15q11-q13
    SIN3A 73448.775 15q24.2
    PTPN9 73546.515 15q24.2
    IMP3 73718.491 15q24
    CSPG4 73753.718 15q24.2
    UBE2Q2 73923.440 15q24.2
    NRG4 74022.899 15q24.2
    RCN2 75011.017 15q23
    HMG20A 75500.298 15q24
    LINGO1 75692.424 15q24.3
    CIB2 76184.046 15q24
    DNAJA4 76344.044 15q25.1
    CRABP1 76419.721 15q24
    CHRNA5 76644.961 15q24
    CHRNA3 76674.707 15q24
    ADAMTS7 76838.600 15q24.2
    MORF4L1 76952.227 15q24
    ST20 77978.237 15q25.1
    BCL2A1 78040.287 15q24.3
    ARNT2 78483.747 15q24
    KIAA1199 78858.767 15q24
    MESDC2 79055.150 15q13
    IL16 79374.522 15q26.3
    MEX3B 80121.183 15q25.2
    CPEB1 81009.006 15q25.2
    ADAMTSL3 82113.842 15q25.2
    SLC28A1 83228.917 15q25-q26
    AKAP13 83724.875 15q24-q25
    DET1 86856.718 15q25.3
    AEN 86965.531 15q26.1
    ISG20 86983.043 15q26
    MFGE8 87242.918 15q25
    FANCI 87588.198 15q26.1
    POLG 87660.540 15q25
    MESP2 88120.593 15q26.1
    ANPEP 88129.130 15q25-q26
    IDH2 88428.216 15q26.1
    CIB1 88574.481 15q25.3-q26
    IQGAP1 88732.477 15q26.1
    CRTC3 88874.202 15q26.1
    FURIN 89212.889 15q26.1
    FES 89229.280 15q26.1
    UNC45A 89274.414 15q26.1
    PRC1 89310.272 15q26.1
    ST8SIA2 90738.144 15q26
    CHD2 91244.555 15q26
    RGMA 91387.641 15q26.1
    NR2F2 94670.161 15q26
    SYNM 97462.809 15q26.3
    HSP90B2P 97616.371 15q26.3
    MEF2A 97923.656 15q26
    ADAMTS17 98329.166 15q24
    ALDH1A3 99237.532 15q26.3
    SELS 99629.913 15q26.3
    PCSK6 99661.656 15q26.3

    GeneCards  

    Contributor(s)

    WrittenJul 2004Philippe Dessen, Sakari Knuutila, Jean-Loup Huret
    Updated Jean-Loup Huret, Philippe Dessen

    Citation

    This paper should be referenced as such :
    Dessen P, Knuutila S, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. Jul 2004 .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_.html
    Dessen P, Huret JL . Chromosome . Atlas Genet Cytogenet Oncol Haematol. .
    URL : http://AtlasGeneticsOncology.org/Indexbychrom/idxa_.html
    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Mon Mar 8 20:27:44 CET 2010
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