| Identity |
| Other names | NONO-TFE3 renal cell carcinoma |
| Classification |
| This renal cell carcinoma, of which there is a single reported case, belongs to the family of Xp11 translocation renal carcinomas. |
| Clinics and Pathology |
| Etiology | Unclear |
| Epidemiology | Single case report in a 39 year old male |
| Pathology | The tumor was described as a papillary renal cell carcinoma. The UOK109 cell line was derived from this neoplasm. |
| Treatment | Surgical excision |
| Prognosis | Unknown |
| Cytogenetics |
| Cytogenetics Morphological | inv(X)(p11.2;q12) |
| Genes involved and Proteins |
| Gene Name | TFE3 |
| Location | Xp11.2 |
| Dna / Rna | The TFE3 gene includes a 5' untranslated region, 8 exons, and a 3' untranslated region. |
| Protein | TFE3 is a transcription factor with a basic helix-loop-helix DNA binding domain and a leucine zipper dimerization domain. TFE3 contains a nuclear localization signal, encoded at the junction of exons 5 and 6, which is retained within all known TFE3 fusion proteins. TFE3 protein is 575 amino acids, and is ubiquitously expressed. TFE3, TFEB, TFEC and Mitf comprise the members of the microphthalmia transcription factor subfamily, which have homologous DNA binding domains and in fact bind to a common DNA sequence. These four transcription factors may homo- or heterodimerize to bind DNA, and they may have functional overlap. |
| Gene Name | p54nrb/NONO |
| Location | Xq12 |
| Protein | p54nrb/NONO is a 471 amino acid protein with several distinctive domains. From N-terminus to C-terminus, it has : PSF and p54nrb/NonO are highly homologous and related proteins. p54nrb/NONO has a region of 320 amino acids with a 71% identity and a 7% similarity to a 320 amino acid region within PSF. Both proteins have both DNA and RNA binding domains, which underlies their multifunctionality. Indeed, these proteins have been implicated in both transcriptional activation and splicing. Both proteins are known to bind to the DNA binding domains of nuclear hormone receptors (such as the thyroid hormone receptor and the retinoid X receptor), and modulate transcriptional activation. These proteins bind to each other, select the same optimal RNA sequence from RNA pools, and have been associated with spliceosomes. Both have been shown to bind to the C-terminal domain of RNA polymerase II, where they may couple pre-mRNA splicing and RNA processing. PSF and NonO enhance Topoisomerase I cleavage of DNA, and induce its jumping to other DNA helices after cleavage. Finally, both have been shown to bind and retain defective and hyperedited mRNAs within the nucleus, preventing translation of mutated proteins. |
| Result of the chromosomal anomaly |
| Hybrid Gene | |
| Description | 5'p54nrb/NONO-3'TFE3 |
| Fusion Protein | |
| Description | The inv (X)(p11.2;q12) results in fusion of virtually the entire sequence of NONO/p54nrb with the C-terminal portion of the TFE transcription factor that contains the basic helix-loop-helix (bHLH) DNA binding domain and Leucine Zipper domain. |
| Bibliography |
| Purification and cDNA cloning of HeLa cell p54nrb, a nuclear protein with two RNA recognition motifs and extensive homology to human splicing factor PSF and Drosophila NONA/BJ6. |
| Dong B, Horowitz DS, Kobayashi R, Krainer AR |
| Nucleic acids research. 1993 ; 21 (17) : 4085-4092. |
| PMID 8371983 |
| Fusion of splicing factor genes PSF and NonO (p54nrb) to the TFE3 gene in papillary renal cell carcinoma. |
| Clark J, Lu YJ, Sidhar SK, Parker C, Gill S, Smedley D, Hamoudi R, Linehan WM, Shipley J, Cooper CS |
| Oncogene. 1997 ; 15 (18) : 2233-2239. |
| PMID 9393982 |
| The intracisternal A-particle proximal enhancer-binding protein activates transcription and is identical to the RNA- and DNA-binding protein p54nrb/NonO. |
| Basu A, Dong B, Krainer AR, Howe CC |
| Molecular and cellular biology. 1997 ; 17 (2) : 677-686. |
| PMID 9001221 |
| PSF and p54nrb bind a conserved stem in U5 snRNA. |
| Peng R, Dye BT, Pˆ©rez I, Barnard DC, Thompson AB, Patton JG |
| RNA (New York, N.Y.). 2002 ; 8 (10) : 1334-1347. |
| PMID 12403470 |
| PSF and p54(nrb)/NonO--multi-functional nuclear proteins. |
| Shav-Tal Y, Zipori D |
| FEBS letters. 2002 ; 531 (2) : 109-114. |
| PMID 12417296 |
| Splicing and transcription-associated proteins PSF and p54nrb/nonO bind to the RNA polymerase II CTD. |
| Emili A, Shales M, McCracken S, Xie W, Tucker PW, Kobayashi R, Blencowe BJ, Ingles CJ |
| RNA (New York, N.Y.). 2002 ; 8 (9) : 1102-1111. |
| PMID 12358429 |
| p54nrb acts as a transcriptional coactivator for activation function 1 of the human androgen receptor. |
| Ishitani K, Yoshida T, Kitagawa H, Ohta H, Nozawa S, Kato S |
| Biochemical and biophysical research communications. 2003 ; 306 (3) : 660-665. |
| PMID 12810069 |
| The multifunctional nuclear protein p54nrb is multiphosphorylated in mitosis and interacts with the mitotic regulator Pin1. |
| Proteau A, Blier S, Albert AL, Lavoie SB, Traish AM, Vincent M |
| Journal of molecular biology. 2005 ; 346 (4) : 1163-1172. |
| PMID 15701524 |
| REVIEW articles | automatic search in PubMed |
| Last year publications | automatic search in PubMed |
| Contributor(s) |
| Written | 08-2005 | Pedram Argani, Marc Ladanyi |
| Dept. of Pathology, room S-801, MSKCC, 1275 York Avenue, New York, NY 10021, USA |
| Citation |
| This paper should be referenced as such : |
| Argani P, Ladanyi M . Kidney: inv(X)(p11.2;q12) in renal cell carcinoma. Atlas Genet Cytogenet Oncol Haematol. August 2005 . URL : http://AtlasGeneticsOncology.org/Tumors/invXp11q12RCCID5057.html |
| © Atlas of Genetics and Cytogenetics in Oncology and Haematology | indexed on : Sat Jul 3 11:55:33 CEST 2010 |
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